GCA_028325845.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaLMJDKBLN_1 (original name was: gnl|Prokka|LMJDKBLN_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	4,599	23,433

gnlProkkaLMJDKBLN_33 (original name was: gnl|Prokka|LMJDKBLN_33)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	RiPP-like	129,631	141,727	quinolidomicin A	Polyketide	3%

gnlProkkaLMJDKBLN_43 (original name was: gnl|Prokka|LMJDKBLN_43)

Region	Type	From	To	Most similar known cluster		Similarity
Region 43.1	RiPP-like	85,668	95,940

gnlProkkaLMJDKBLN_47 (original name was: gnl|Prokka|LMJDKBLN_47)

Region	Type	From	To	Most similar known cluster		Similarity
Region 47.1	T3PKS	71,791	94,354

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	RiPP-like	4,599	23,433
Region 33.1	RiPP-like	129,631	141,727	quinolidomicin A	Polyketide	3%
Region 43.1	RiPP-like	85,668	95,940
Region 47.1	T3PKS	71,791	94,354

No secondary metabolite regions were found in these records:: gnlProkkaLMJDKBLN_2 (original name was: gnl|Prokka|LMJDKBLN_2); gnlProkkaLMJDKBLN_3 (original name was: gnl|Prokka|LMJDKBLN_3); gnlProkkaLMJDKBLN_4 (original name was: gnl|Prokka|LMJDKBLN_4); gnlProkkaLMJDKBLN_5 (original name was: gnl|Prokka|LMJDKBLN_5); gnlProkkaLMJDKBLN_6 (original name was: gnl|Prokka|LMJDKBLN_6); gnlProkkaLMJDKBLN_7 (original name was: gnl|Prokka|LMJDKBLN_7); gnlProkkaLMJDKBLN_8 (original name was: gnl|Prokka|LMJDKBLN_8); gnlProkkaLMJDKBLN_9 (original name was: gnl|Prokka|LMJDKBLN_9); gnlProkkaLMJDKBLN_10 (original name was: gnl|Prokka|LMJDKBLN_10); gnlProkkaLMJDKBLN_11 (original name was: gnl|Prokka|LMJDKBLN_11); gnlProkkaLMJDKBLN_12 (original name was: gnl|Prokka|LMJDKBLN_12); gnlProkkaLMJDKBLN_13 (original name was: gnl|Prokka|LMJDKBLN_13); gnlProkkaLMJDKBLN_14 (original name was: gnl|Prokka|LMJDKBLN_14); gnlProkkaLMJDKBLN_15 (original name was: gnl|Prokka|LMJDKBLN_15); gnlProkkaLMJDKBLN_16 (original name was: gnl|Prokka|LMJDKBLN_16); gnlProkkaLMJDKBLN_17 (original name was: gnl|Prokka|LMJDKBLN_17); gnlProkkaLMJDKBLN_18 (original name was: gnl|Prokka|LMJDKBLN_18); gnlProkkaLMJDKBLN_19 (original name was: gnl|Prokka|LMJDKBLN_19); gnlProkkaLMJDKBLN_20 (original name was: gnl|Prokka|LMJDKBLN_20); gnlProkkaLMJDKBLN_21 (original name was: gnl|Prokka|LMJDKBLN_21); gnlProkkaLMJDKBLN_22 (original name was: gnl|Prokka|LMJDKBLN_22); gnlProkkaLMJDKBLN_23 (original name was: gnl|Prokka|LMJDKBLN_23); gnlProkkaLMJDKBLN_24 (original name was: gnl|Prokka|LMJDKBLN_24); gnlProkkaLMJDKBLN_25 (original name was: gnl|Prokka|LMJDKBLN_25); gnlProkkaLMJDKBLN_26 (original name was: gnl|Prokka|LMJDKBLN_26); gnlProkkaLMJDKBLN_27 (original name was: gnl|Prokka|LMJDKBLN_27); gnlProkkaLMJDKBLN_28 (original name was: gnl|Prokka|LMJDKBLN_28); gnlProkkaLMJDKBLN_29 (original name was: gnl|Prokka|LMJDKBLN_29); gnlProkkaLMJDKBLN_30 (original name was: gnl|Prokka|LMJDKBLN_30); gnlProkkaLMJDKBLN_31 (original name was: gnl|Prokka|LMJDKBLN_31); gnlProkkaLMJDKBLN_32 (original name was: gnl|Prokka|LMJDKBLN_32); gnlProkkaLMJDKBLN_34 (original name was: gnl|Prokka|LMJDKBLN_34); gnlProkkaLMJDKBLN_35 (original name was: gnl|Prokka|LMJDKBLN_35); gnlProkkaLMJDKBLN_36 (original name was: gnl|Prokka|LMJDKBLN_36); gnlProkkaLMJDKBLN_37 (original name was: gnl|Prokka|LMJDKBLN_37); gnlProkkaLMJDKBLN_38 (original name was: gnl|Prokka|LMJDKBLN_38); gnlProkkaLMJDKBLN_39 (original name was: gnl|Prokka|LMJDKBLN_39); gnlProkkaLMJDKBLN_40 (original name was: gnl|Prokka|LMJDKBLN_40); gnlProkkaLMJDKBLN_41 (original name was: gnl|Prokka|LMJDKBLN_41); gnlProkkaLMJDKBLN_42 (original name was: gnl|Prokka|LMJDKBLN_42); gnlProkkaLMJDKBLN_44 (original name was: gnl|Prokka|LMJDKBLN_44); gnlProkkaLMJDKBLN_45 (original name was: gnl|Prokka|LMJDKBLN_45); gnlProkkaLMJDKBLN_46 (original name was: gnl|Prokka|LMJDKBLN_46); gnlProkkaLMJDKBLN_48 (original name was: gnl|Prokka|LMJDKBLN_48)

Compact view

gnlProkkaLMJDKBLN_1 - Region 1 - RiPP-like

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Location: 4,599 - 23,433 nt. (total: 18,835 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLMJDKBLN_33 - Region 1 - RiPP-like

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Location: 129,631 - 141,727 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaLMJDKBLN_43 - Region 1 - RiPP-like

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Location: 85,668 - 95,940 nt. (total: 10,273 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLMJDKBLN_47 - Region 1 - T3PKS

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Location: 71,791 - 94,354 nt. (total: 22,564 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.