GCA_028325885.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaBIIGPAPK_21 (original name was: gnl|Prokka|BIIGPAPK_21)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	T3PKS	129,908	171,074

gnlProkkaBIIGPAPK_25 (original name was: gnl|Prokka|BIIGPAPK_25)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	RiPP-like	112,349	131,198

gnlProkkaBIIGPAPK_27 (original name was: gnl|Prokka|BIIGPAPK_27)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	RiPP-like	73,954	86,050	quinolidomicin A	Polyketide	3%

Region	Type	From	To	Most similar known cluster	Similarity
Region 21.1	T3PKS	129,908	171,074
Region 25.1	RiPP-like	112,349	131,198
Region 27.1	RiPP-like	73,954	86,050	quinolidomicin A	Polyketide	3%

No secondary metabolite regions were found in these records:: gnlProkkaBIIGPAPK_1 (original name was: gnl|Prokka|BIIGPAPK_1); gnlProkkaBIIGPAPK_2 (original name was: gnl|Prokka|BIIGPAPK_2); gnlProkkaBIIGPAPK_3 (original name was: gnl|Prokka|BIIGPAPK_3); gnlProkkaBIIGPAPK_4 (original name was: gnl|Prokka|BIIGPAPK_4); gnlProkkaBIIGPAPK_5 (original name was: gnl|Prokka|BIIGPAPK_5); gnlProkkaBIIGPAPK_6 (original name was: gnl|Prokka|BIIGPAPK_6); gnlProkkaBIIGPAPK_7 (original name was: gnl|Prokka|BIIGPAPK_7); gnlProkkaBIIGPAPK_8 (original name was: gnl|Prokka|BIIGPAPK_8); gnlProkkaBIIGPAPK_9 (original name was: gnl|Prokka|BIIGPAPK_9); gnlProkkaBIIGPAPK_10 (original name was: gnl|Prokka|BIIGPAPK_10); gnlProkkaBIIGPAPK_11 (original name was: gnl|Prokka|BIIGPAPK_11); gnlProkkaBIIGPAPK_12 (original name was: gnl|Prokka|BIIGPAPK_12); gnlProkkaBIIGPAPK_13 (original name was: gnl|Prokka|BIIGPAPK_13); gnlProkkaBIIGPAPK_14 (original name was: gnl|Prokka|BIIGPAPK_14); gnlProkkaBIIGPAPK_15 (original name was: gnl|Prokka|BIIGPAPK_15); gnlProkkaBIIGPAPK_16 (original name was: gnl|Prokka|BIIGPAPK_16); gnlProkkaBIIGPAPK_17 (original name was: gnl|Prokka|BIIGPAPK_17); gnlProkkaBIIGPAPK_18 (original name was: gnl|Prokka|BIIGPAPK_18); gnlProkkaBIIGPAPK_19 (original name was: gnl|Prokka|BIIGPAPK_19); gnlProkkaBIIGPAPK_20 (original name was: gnl|Prokka|BIIGPAPK_20); gnlProkkaBIIGPAPK_22 (original name was: gnl|Prokka|BIIGPAPK_22); gnlProkkaBIIGPAPK_23 (original name was: gnl|Prokka|BIIGPAPK_23); gnlProkkaBIIGPAPK_24 (original name was: gnl|Prokka|BIIGPAPK_24); gnlProkkaBIIGPAPK_26 (original name was: gnl|Prokka|BIIGPAPK_26); gnlProkkaBIIGPAPK_28 (original name was: gnl|Prokka|BIIGPAPK_28); gnlProkkaBIIGPAPK_29 (original name was: gnl|Prokka|BIIGPAPK_29)

Compact view

gnlProkkaBIIGPAPK_21 - Region 1 - T3PKS

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Location: 129,908 - 171,074 nt. (total: 41,167 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaBIIGPAPK_25 - Region 1 - RiPP-like

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Location: 112,349 - 131,198 nt. (total: 18,850 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaBIIGPAPK_27 - Region 1 - RiPP-like

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Location: 73,954 - 86,050 nt. (total: 12,097 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1