GCA_028328685.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHMBGOODC_75 (original name was: gnl|Prokka|HMBGOODC_75)

Region	Type	From	To	Most similar known cluster		Similarity
Region 75.1	NRPS	1	12,949

gnlProkkaHMBGOODC_104 (original name was: gnl|Prokka|HMBGOODC_104)

Region	Type	From	To	Most similar known cluster		Similarity
Region 104.1	hydrogen-cyanide	3,139	16,375

Region	Type	From	To	Most similar known cluster	Similarity
Region 75.1	NRPS	1	12,949
Region 104.1	hydrogen-cyanide	3,139	16,375

Compact view

gnlProkkaHMBGOODC_75 - Region 1 - NRPS

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Location: 1 - 12,949 nt. (total: 12,949 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

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Similar known gene clusters from MIBiG 3.1

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 12949:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg75_1

AMP-binding (3..398): X

nrpys: Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DYFGSGSLIK
Nearest Stachelhaus code(s):: Ala DMGGFGCLIK (50% 8Å match); Leu DYFTFGLIIK (41% 8Å match); Hpr DYQYCGHLIK (32% 8Å match)
Stachelhaus code match:: 60% (weak)

AMP-binding (1161..1580): X

nrpys: Tyr, bOH-Tyr