GCA_028328685.1 - 8 region(s)

Identified primary metabolite regions

c00008_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Rnf_complex	E-MGC	71,256	96,316	Rnf complex C. sporogenes	RNF	83%

c00010_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	TPP_fatty_acids	Putative	13,191	38,048

c00020_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_20)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	TPP_AA_metabolism	Putative	1	17,077

c00027_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_27)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	Pyruvate2acetate-formate	SCFA	17,032	40,007	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00028_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_28)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	porA	SCFA	26,898	49,733	porA C. sporogenes	POR	60%

c00029_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_29)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	OD_unknown	Putative	1	23,133

c00046_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_46)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 46.1	succinate2propionate	SCFA	3,343	27,870	Succinate to propionate B. theta	PRO	50%

c00093_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_93)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 93.1	Fumarate2succinate	SCFA	45,451	68,921	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_1); c00002_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_2); c00003_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_3); c00004_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_4); c00005_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_5); c00006_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_6); c00007_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_7); c00009_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_9); c00011_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_11); c00012_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_12); c00013_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_13); c00014_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_14); c00015_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_15); c00016_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_16); c00017_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_17); c00018_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_18); c00019_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_19); c00021_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_21); c00022_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_22); c00023_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_23); c00024_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_24); c00025_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_25); c00026_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_26); c00030_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_30); c00031_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_31); c00032_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_32); c00033_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_33); c00034_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_34); c00035_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_35); c00036_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_36); c00037_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_37); c00038_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_38); c00039_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_39); c00040_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_40); c00041_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_41); c00042_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_42); c00043_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_43); c00044_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_44); c00045_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_45); c00047_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_47); c00048_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_48); c00049_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_49); c00050_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_50); c00051_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_51); c00052_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_52); c00053_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_53); c00054_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_54); c00055_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_55); c00056_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_56); c00057_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_57); c00058_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_58); c00059_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_59); c00060_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_60); c00061_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_61); c00062_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_62); c00063_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_63); c00064_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_64); c00065_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_65); c00066_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_66); c00067_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_67); c00068_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_68); c00069_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_69); c00070_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_70); c00071_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_71); c00072_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_72); c00073_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_73); c00074_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_74); c00075_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_75); c00076_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_76); c00077_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_77); c00078_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_78); c00079_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_79); c00080_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_80); c00081_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_81); c00082_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_82); c00083_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_83); c00084_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_84); c00085_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_85); c00086_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_86); c00087_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_87); c00088_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_88); c00089_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_89); c00090_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_90); c00091_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_91); c00092_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_92); c00094_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_94); c00095_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_95); c00096_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_96); c00097_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_97); c00098_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_98); c00099_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_99); c00100_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_100); c00101_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_101); c00102_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_102); c00103_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_103); c00104_gnlPro.. (original name was: gnl|Prokka|HMBGOODC_104)

Compact view

c00008_gnlPro.. - Region 1 - Rnf_complex

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Location: 71,256 - 96,316 nt. (total: 25,061 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

Similar known gene clusters

c00010_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 13,191 - 38,048 nt. (total: 24,858 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00020_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 17,077 nt. (total: 17,077 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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transport-related genes

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resistance genes

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00027_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 17,032 - 40,007 nt. (total: 22,976 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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KnownClusterBlast

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c00028_gnlPro.. - Region 1 - porA

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Location: 26,898 - 49,733 nt. (total: 22,836 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

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c00029_gnlPro.. - Region 1 - OD_unknown

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Location: 1 - 23,133 nt. (total: 23,133 nt) Show pHMM detection rules used

Region on contig edge.

OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

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No matches found.

c00046_gnlPro.. - Region 1 - succinate2propionate

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Location: 3,343 - 27,870 nt. (total: 24,528 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

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KnownClusterBlast

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c00093_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 45,451 - 68,921 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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electron transport genes

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Gene details

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KnownClusterBlast

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