Select genomic region:
Overview
10.1
11.1
11.2
16.1
17.1
20.1
25.1
33.1
55.1

### Identified primary metabolite regions

c00010_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_10)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 10.1 | succinate2propionate | SCFA | 87,527 | 112,062 | Succinate to propionate B. theta | PRO | 50%

c00011_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_11)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 11.1 | Pyruvate2acetate-formate | SCFA | 277,781 | 300,756 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%
Region 11.2 | Fumarate2succinate | SCFA | 504,604 | 528,074 | Fumarate to succinate B. thetaiotaomicron | SUC | 100%

c00016_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_16)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 16.1 | porA | SCFA | 19,808 | 42,643 | porA C. sporogenes | POR | 60%

c00017_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_17)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 17.1 | Rnf_complex | E-MGC | 27,820 | 52,880 | Rnf complex C. sporogenes | RNF | 83%

c00020_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_20)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 20.1 | OD_unknown | Putative | 1 | 23,316 |

c00025_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_25)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 25.1 | TPP_fatty_acids | Putative | 1 | 28,482 |

c00033_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_33)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 33.1 | TPP_AA_metabolism | Putative | 235,810 | 261,777 |

c00055_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_55)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 55.1 | TPP_fatty_acids | Putative | 160,691 | 185,548 |

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 10.1 | succinate2propionate | SCFA | 87,527 | 112,062 | Succinate to propionate B. theta | PRO | 50%
Region 11.1 | Pyruvate2acetate-formate | SCFA | 277,781 | 300,756 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%
Region 11.2 | Fumarate2succinate | SCFA | 504,604 | 528,074 | Fumarate to succinate B. thetaiotaomicron | SUC | 100%
Region 16.1 | porA | SCFA | 19,808 | 42,643 | porA C. sporogenes | POR | 60%
Region 17.1 | Rnf_complex | E-MGC | 27,820 | 52,880 | Rnf complex C. sporogenes | RNF | 83%
Region 20.1 | OD_unknown | Putative | 1 | 23,316 |
Region 25.1 | TPP_fatty_acids | Putative | 1 | 28,482 |
Region 33.1 | TPP_AA_metabolism | Putative | 235,810 | 261,777 |
Region 55.1 | TPP_fatty_acids | Putative | 160,691 | 185,548 |

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_9)
  c00012_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_15)
  c00018_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_19)
  c00021_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_24)
  c00026_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_32)
  c00034_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_54)
  c00056_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|NNBJDGPF_60)

Compact view
c00010_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 87,527 - 112,062 nt. (total: 24,536 nt) Show pHMM detection rules used
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00011_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 277,781 - 300,756 nt. (total: 22,976 nt) Show pHMM detection rules used
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00011_gnlPro.. - Region 2 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 504,604 - 528,074 nt. (total: 23,471 nt) Show pHMM detection rules used
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00016_gnlPro.. - Region 1 - porA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 19,808 - 42,643 nt. (total: 22,836 nt) Show pHMM detection rules used
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00017_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 27,820 - 52,880 nt. (total: 25,061 nt) Show pHMM detection rules used
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00020_gnlPro.. - Region 1 - OD_unknown
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 23,316 nt. (total: 23,316 nt) Show pHMM detection rules used
Region on contig edge.
OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00025_gnlPro.. - Region 1 - TPP_fatty_acids
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 28,482 nt. (total: 28,482 nt) Show pHMM detection rules used
Region on contig edge.
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00033_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 235,810 - 261,777 nt. (total: 25,968 nt) Show pHMM detection rules used
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00055_gnlPro.. - Region 1 - TPP_fatty_acids
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 160,691 - 185,548 nt. (total: 24,858 nt) Show pHMM detection rules used
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.