GCA_028396465.1 - 8 region(s)

Identified primary metabolite regions

c00023_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	porA	SCFA	19,176	42,019	porA C. sporogenes	POR	80%

c00029_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_29)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	Rnf_complex	E-MGC	10,806	36,040	Rnf complex C. sporogenes	RNF	83%

c00031_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_31)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	NADH_dehydrogenase_I	E-MGC	153,560	183,791	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00032_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_32)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 32.1	TPP_AA_metabolism	Putative	33,486	59,576

c00059_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_59)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 59.1	PFOR_II_pathway	SCFA	19,406	38,584	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00063_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_63)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 63.1	Pyruvate2acetate-formate	SCFA	1,837	24,792	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00075_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_75)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 75.1	succinate2propionate	SCFA	92,474	117,180	Succinate to propionate B. theta	PRO	75%

c00119_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_119)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 119.1	Fumarate2succinate	SCFA	74,799	98,269	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_1); c00002_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_2); c00003_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_3); c00004_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_4); c00005_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_5); c00006_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_6); c00007_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_7); c00008_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_8); c00009_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_9); c00010_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_10); c00011_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_11); c00012_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_12); c00013_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_13); c00014_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_14); c00015_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_15); c00016_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_16); c00017_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_17); c00018_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_18); c00019_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_19); c00020_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_20); c00021_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_21); c00022_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_22); c00024_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_24); c00025_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_25); c00026_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_26); c00027_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_27); c00028_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_28); c00030_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_30); c00033_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_33); c00034_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_34); c00035_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_35); c00036_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_36); c00037_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_37); c00038_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_38); c00039_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_39); c00040_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_40); c00041_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_41); c00042_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_42); c00043_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_43); c00044_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_44); c00045_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_45); c00046_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_46); c00047_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_47); c00048_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_48); c00049_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_49); c00050_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_50); c00051_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_51); c00052_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_52); c00053_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_53); c00054_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_54); c00055_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_55); c00056_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_56); c00057_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_57); c00058_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_58); c00060_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_60); c00061_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_61); c00062_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_62); c00064_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_64); c00065_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_65); c00066_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_66); c00067_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_67); c00068_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_68); c00069_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_69); c00070_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_70); c00071_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_71); c00072_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_72); c00073_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_73); c00074_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_74); c00076_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_76); c00077_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_77); c00078_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_78); c00079_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_79); c00080_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_80); c00081_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_81); c00082_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_82); c00083_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_83); c00084_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_84); c00085_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_85); c00086_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_86); c00087_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_87); c00088_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_88); c00089_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_89); c00090_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_90); c00091_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_91); c00092_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_92); c00093_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_93); c00094_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_94); c00095_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_95); c00096_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_96); c00097_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_97); c00098_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_98); c00099_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_99); c00100_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_100); c00101_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_101); c00102_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_102); c00103_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_103); c00104_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_104); c00105_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_105); c00106_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_106); c00107_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_107); c00108_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_108); c00109_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_109); c00110_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_110); c00111_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_111); c00112_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_112); c00113_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_113); c00114_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_114); c00115_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_115); c00116_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_116); c00117_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_117); c00118_gnlPro.. (original name was: gnl|Prokka|MKMJPMDD_118)

Compact view

c00023_gnlPro.. - Region 1 - porA

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Location: 19,176 - 42,019 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

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transport-related genes

regulatory genes

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c00029_gnlPro.. - Region 1 - Rnf_complex

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Location: 10,806 - 36,040 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

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transport-related genes

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c00031_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 153,560 - 183,791 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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resistance genes

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c00032_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 33,486 - 59,576 nt. (total: 26,091 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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No matches found.

c00059_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 19,406 - 38,584 nt. (total: 19,179 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

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c00063_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1,837 - 24,792 nt. (total: 22,956 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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c00075_gnlPro.. - Region 1 - succinate2propionate

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Location: 92,474 - 117,180 nt. (total: 24,707 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

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electron transport genes

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c00119_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 74,799 - 98,269 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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