GCA_028396765.1 - 8 region(s)

Identified primary metabolite regions

c00007_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	porA	SCFA	19,056	41,899	porA C. sporogenes	POR	80%

c00012_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Rnf_complex	E-MGC	38,224	63,458	Rnf complex C. sporogenes	RNF	83%

c00016_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	succinate2propionate	SCFA	18,725	43,337	Succinate to propionate B. theta	PRO	75%

c00027_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_27)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	Pyruvate2acetate-formate	SCFA	12,143	35,098	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00044_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_44)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	NADH_dehydrogenase_I	E-MGC	144,713	174,944	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00055_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_55)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	Fumarate2succinate	SCFA	50,733	74,203	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00066_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_66)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 66.1	PFOR_II_pathway	SCFA	87,815	111,372	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00077_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_77)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 77.1	TPP_AA_metabolism	Putative	12,220	38,294

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_1); c00002_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_2); c00003_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_3); c00004_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_4); c00005_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_5); c00006_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_6); c00008_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_8); c00009_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_9); c00010_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_10); c00011_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_11); c00013_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_13); c00014_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_14); c00015_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_15); c00017_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_17); c00018_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_18); c00019_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_19); c00020_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_20); c00021_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_21); c00022_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_22); c00023_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_23); c00024_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_24); c00025_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_25); c00026_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_26); c00028_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_28); c00029_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_29); c00030_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_30); c00031_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_31); c00032_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_32); c00033_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_33); c00034_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_34); c00035_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_35); c00036_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_36); c00037_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_37); c00038_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_38); c00039_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_39); c00040_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_40); c00041_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_41); c00042_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_42); c00043_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_43); c00045_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_45); c00046_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_46); c00047_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_47); c00048_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_48); c00049_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_49); c00050_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_50); c00051_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_51); c00052_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_52); c00053_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_53); c00054_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_54); c00056_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_56); c00057_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_57); c00058_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_58); c00059_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_59); c00060_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_60); c00061_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_61); c00062_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_62); c00063_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_63); c00064_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_64); c00065_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_65); c00067_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_67); c00068_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_68); c00069_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_69); c00070_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_70); c00071_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_71); c00072_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_72); c00073_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_73); c00074_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_74); c00075_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_75); c00076_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_76); c00078_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_78); c00079_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_79); c00080_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_80); c00081_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_81); c00082_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_82); c00083_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_83); c00084_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_84); c00085_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_85); c00086_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_86); c00087_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_87); c00088_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_88); c00089_gnlPro.. (original name was: gnl|Prokka|GMMNGLIN_89)

Compact view

c00007_gnlPro.. - Region 1 - porA

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Location: 19,056 - 41,899 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00012_gnlPro.. - Region 1 - Rnf_complex

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Location: 38,224 - 63,458 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00016_gnlPro.. - Region 1 - succinate2propionate

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Location: 18,725 - 43,337 nt. (total: 24,613 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00027_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 12,143 - 35,098 nt. (total: 22,956 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00044_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 144,713 - 174,944 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00055_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 50,733 - 74,203 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00066_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 87,815 - 111,372 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00077_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 12,220 - 38,294 nt. (total: 26,075 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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