GCA_028396845.1 - 8 region(s)

Identified primary metabolite regions

c00022_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_22)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	PFOR_II_pathway	SCFA	8,742	32,299	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00133_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_133)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 133.1	Fumarate2succinate	SCFA	6,847	30,278	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00144_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_144)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 144.1	Pyruvate2acetate-formate	SCFA	13,155	36,110	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00170_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_170)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 170.1	succinate2propionate	SCFA	25,412	41,962	Succinate to propionate B. theta	PRO	75%

c00186_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_186)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 186.1	TPP_AA_metabolism	Putative	1	20,090

c00194_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_194)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 194.1	NADH_dehydrogenase_I	E-MGC	1	23,893	NADH dehydrogenase I Bacteroides sp.	NADHD	76%

c00202_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_202)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 202.1	porA	SCFA	19,056	41,899	porA C. sporogenes	POR	80%

c00239_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_239)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 239.1	Rnf_complex	E-MGC	1	15,595	Rnf complex C. sporogenes	RNF	83%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_1); c00002_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_2); c00003_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_3); c00004_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_4); c00005_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_5); c00006_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_6); c00007_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_7); c00008_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_8); c00009_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_9); c00010_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_10); c00011_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_11); c00012_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_12); c00013_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_13); c00014_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_14); c00015_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_15); c00016_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_16); c00017_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_17); c00018_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_18); c00019_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_19); c00020_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_20); c00021_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_21); c00023_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_23); c00024_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_24); c00025_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_25); c00026_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_26); c00027_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_27); c00028_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_28); c00029_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_29); c00030_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_30); c00031_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_31); c00032_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_32); c00033_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_33); c00034_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_34); c00035_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_35); c00036_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_36); c00037_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_37); c00038_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_38); c00039_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_39); c00040_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_40); c00041_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_41); c00042_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_42); c00043_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_43); c00044_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_44); c00045_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_45); c00046_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_46); c00047_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_47); c00048_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_48); c00049_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_49); c00050_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_50); c00051_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_51); c00052_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_52); c00053_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_53); c00054_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_54); c00055_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_55); c00056_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_56); c00057_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_57); c00058_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_58); c00059_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_59); c00060_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_60); c00061_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_61); c00062_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_62); c00063_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_63); c00064_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_64); c00065_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_65); c00066_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_66); c00067_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_67); c00068_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_68); c00069_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_69); c00070_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_70); c00071_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_71); c00072_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_72); c00073_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_73); c00074_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_74); c00075_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_75); c00076_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_76); c00077_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_77); c00078_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_78); c00079_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_79); c00080_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_80); c00081_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_81); c00082_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_82); c00083_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_83); c00084_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_84); c00085_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_85); c00086_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_86); c00087_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_87); c00088_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_88); c00089_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_89); c00090_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_90); c00091_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_91); c00092_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_92); c00093_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_93); c00094_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_94); c00095_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_95); c00096_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_96); c00097_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_97); c00098_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_98); c00099_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_99); c00100_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_100); c00101_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_101); c00102_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_102); c00103_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_103); c00104_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_104); c00105_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_105); c00106_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_106); c00107_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_107); c00108_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_108); c00109_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_109); c00110_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_110); c00111_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_111); c00112_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_112); c00113_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_113); c00114_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_114); c00115_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_115); c00116_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_116); c00117_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_117); c00118_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_118); c00119_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_119); c00120_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_120); c00121_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_121); c00122_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_122); c00123_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_123); c00124_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_124); c00125_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_125); c00126_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_126); c00127_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_127); c00128_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_128); c00129_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_129); c00130_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_130); c00131_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_131); c00132_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_132); c00134_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_134); c00135_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_135); c00136_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_136); c00137_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_137); c00138_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_138); c00139_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_139); c00140_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_140); c00141_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_141); c00142_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_142); c00143_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_143); c00145_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_145); c00146_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_146); c00147_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_147); c00148_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_148); c00149_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_149); c00150_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_150); c00151_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_151); c00152_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_152); c00153_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_153); c00154_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_154); c00155_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_155); c00156_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_156); c00157_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_157); c00158_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_158); c00159_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_159); c00160_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_160); c00161_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_161); c00162_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_162); c00163_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_163); c00164_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_164); c00165_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_165); c00166_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_166); c00167_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_167); c00168_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_168); c00169_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_169); c00171_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_171); c00172_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_172); c00173_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_173); c00174_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_174); c00175_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_175); c00176_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_176); c00177_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_177); c00178_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_178); c00179_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_179); c00180_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_180); c00181_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_181); c00182_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_182); c00183_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_183); c00184_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_184); c00185_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_185); c00187_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_187); c00188_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_188); c00189_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_189); c00190_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_190); c00191_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_191); c00192_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_192); c00193_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_193); c00195_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_195); c00196_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_196); c00197_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_197); c00198_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_198); c00199_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_199); c00200_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_200); c00201_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_201); c00203_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_203); c00204_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_204); c00205_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_205); c00206_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_206); c00207_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_207); c00208_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_208); c00209_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_209); c00210_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_210); c00211_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_211); c00212_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_212); c00213_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_213); c00214_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_214); c00215_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_215); c00216_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_216); c00217_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_217); c00218_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_218); c00219_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_219); c00220_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_220); c00221_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_221); c00222_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_222); c00223_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_223); c00224_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_224); c00225_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_225); c00226_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_226); c00227_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_227); c00228_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_228); c00229_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_229); c00230_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_230); c00231_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_231); c00232_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_232); c00233_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_233); c00234_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_234); c00235_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_235); c00236_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_236); c00237_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_237); c00238_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_238); c00240_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_240); c00241_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_241); c00242_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_242); c00243_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_243); c00244_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_244); c00245_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_245); c00246_gnlPro.. (original name was: gnl|Prokka|JFAGBGHC_246)

Compact view

c00022_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 8,742 - 32,299 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00133_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 6,847 - 30,278 nt. (total: 23,432 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00144_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 13,155 - 36,110 nt. (total: 22,956 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00170_gnlPro.. - Region 1 - succinate2propionate

Download region GenBank file

Location: 25,412 - 41,962 nt. (total: 16,551 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

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c00186_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 20,090 nt. (total: 20,090 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00194_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 1 - 23,893 nt. (total: 23,893 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00202_gnlPro.. - Region 1 - porA

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Location: 19,056 - 41,899 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00239_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 15,595 nt. (total: 15,595 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

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