GCA_028396985.1 - 7 region(s)

Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	porA	SCFA	81,579	104,422	porA C. sporogenes	POR	80%

c00007_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	PFOR_II_pathway	SCFA	92,321	115,878	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00009_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_9)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	TPP_AA_metabolism	Putative	9,154	35,235

c00025_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_25)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	Rnf_complex	E-MGC	4,409	29,643	Rnf complex C. sporogenes	RNF	83%

c00033_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_33)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	NADH_dehydrogenase_I	E-MGC	258,840	289,071	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00064_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_64)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 64.1	succinate2propionate	SCFA	1	7,455	Succinate to propionate B. theta	PRO	58%

c00088_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_88)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 88.1	Fumarate2succinate	SCFA	37,241	60,711	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_1); c00002_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_2); c00003_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_3); c00005_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_5); c00006_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_6); c00008_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_8); c00010_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_10); c00011_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_11); c00012_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_12); c00013_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_13); c00014_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_14); c00015_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_15); c00016_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_16); c00017_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_17); c00018_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_18); c00019_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_19); c00020_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_20); c00021_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_21); c00022_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_22); c00023_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_23); c00024_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_24); c00026_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_26); c00027_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_27); c00028_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_28); c00029_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_29); c00030_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_30); c00031_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_31); c00032_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_32); c00034_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_34); c00035_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_35); c00036_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_36); c00037_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_37); c00038_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_38); c00039_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_39); c00040_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_40); c00041_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_41); c00042_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_42); c00043_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_43); c00044_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_44); c00045_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_45); c00046_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_46); c00047_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_47); c00048_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_48); c00049_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_49); c00050_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_50); c00051_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_51); c00052_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_52); c00053_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_53); c00054_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_54); c00055_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_55); c00056_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_56); c00057_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_57); c00058_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_58); c00059_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_59); c00060_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_60); c00061_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_61); c00062_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_62); c00063_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_63); c00065_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_65); c00066_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_66); c00067_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_67); c00068_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_68); c00069_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_69); c00070_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_70); c00071_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_71); c00072_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_72); c00073_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_73); c00074_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_74); c00075_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_75); c00076_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_76); c00077_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_77); c00078_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_78); c00079_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_79); c00080_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_80); c00081_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_81); c00082_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_82); c00083_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_83); c00084_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_84); c00085_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_85); c00086_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_86); c00087_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_87); c00089_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_89); c00090_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_90); c00091_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_91); c00092_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_92); c00093_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_93); c00094_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_94); c00095_gnlPro.. (original name was: gnl|Prokka|BOICOCGK_95)

Compact view

c00004_gnlPro.. - Region 1 - porA

Download region GenBank file

Location: 81,579 - 104,422 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00007_gnlPro.. - Region 1 - PFOR_II_pathway

Download region GenBank file

Location: 92,321 - 115,878 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00009_gnlPro.. - Region 1 - TPP_AA_metabolism

Download region GenBank file

Location: 9,154 - 35,235 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00025_gnlPro.. - Region 1 - Rnf_complex

Download region GenBank file

Location: 4,409 - 29,643 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00033_gnlPro.. - Region 1 - NADH_dehydrogenase_I

Download region GenBank file

Location: 258,840 - 289,071 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00064_gnlPro.. - Region 1 - succinate2propionate

Download region GenBank file

Location: 1 - 7,455 nt. (total: 7,455 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00088_gnlPro.. - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 37,241 - 60,711 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters