GCA_028397055.1 - 7 region(s)

Identified primary metabolite regions

c00006_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	porA	SCFA	81,579	104,422	porA C. sporogenes	POR	80%

c00008_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	PFOR_II_pathway	SCFA	92,321	115,878	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00025_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_25)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	Rnf_complex	E-MGC	1,393	26,627	Rnf complex C. sporogenes	RNF	83%

c00033_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_33)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	NADH_dehydrogenase_I	E-MGC	54,517	84,748	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00055_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_55)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	TPP_AA_metabolism	Putative	9,154	35,235

c00064_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_64)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 64.1	succinate2propionate	SCFA	1	7,455	Succinate to propionate B. theta	PRO	58%

c00092_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_92)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 92.1	Fumarate2succinate	SCFA	37,241	60,711	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_1); c00002_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_2); c00003_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_3); c00004_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_4); c00005_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_5); c00007_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_7); c00009_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_9); c00010_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_10); c00011_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_11); c00012_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_12); c00013_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_13); c00014_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_14); c00015_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_15); c00016_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_16); c00017_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_17); c00018_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_18); c00019_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_19); c00020_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_20); c00021_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_21); c00022_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_22); c00023_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_23); c00024_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_24); c00026_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_26); c00027_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_27); c00028_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_28); c00029_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_29); c00030_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_30); c00031_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_31); c00032_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_32); c00034_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_34); c00035_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_35); c00036_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_36); c00037_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_37); c00038_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_38); c00039_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_39); c00040_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_40); c00041_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_41); c00042_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_42); c00043_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_43); c00044_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_44); c00045_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_45); c00046_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_46); c00047_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_47); c00048_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_48); c00049_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_49); c00050_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_50); c00051_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_51); c00052_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_52); c00053_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_53); c00054_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_54); c00056_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_56); c00057_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_57); c00058_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_58); c00059_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_59); c00060_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_60); c00061_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_61); c00062_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_62); c00063_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_63); c00065_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_65); c00066_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_66); c00067_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_67); c00068_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_68); c00069_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_69); c00070_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_70); c00071_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_71); c00072_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_72); c00073_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_73); c00074_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_74); c00075_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_75); c00076_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_76); c00077_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_77); c00078_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_78); c00079_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_79); c00080_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_80); c00081_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_81); c00082_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_82); c00083_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_83); c00084_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_84); c00085_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_85); c00086_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_86); c00087_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_87); c00088_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_88); c00089_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_89); c00090_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_90); c00091_gnlPro.. (original name was: gnl|Prokka|ECAAODFN_91)

Compact view

c00006_gnlPro.. - Region 1 - porA

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Location: 81,579 - 104,422 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00008_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 92,321 - 115,878 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00025_gnlPro.. - Region 1 - Rnf_complex

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Location: 1,393 - 26,627 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00033_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 54,517 - 84,748 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00055_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 9,154 - 35,235 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00064_gnlPro.. - Region 1 - succinate2propionate

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Location: 1 - 7,455 nt. (total: 7,455 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00092_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 37,241 - 60,711 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

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