GCA_028398085.1 - 7 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Pyruvate2acetate-formate	SCFA	78,571	101,526	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00003_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	PFOR_II_pathway	SCFA	46,391	69,948	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00006_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Rnf_complex	E-MGC	34,324	59,558	Rnf complex C. sporogenes	RNF	83%

c00022_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_22)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	NADH_dehydrogenase_I	E-MGC	259,542	289,773	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00033_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_33)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	porA	SCFA	208,983	231,826	porA C. sporogenes	POR	80%
Region 33.2	succinate2propionate	SCFA	303,656	328,362	Succinate to propionate B. theta	PRO	58%

c00044_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_44)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	TPP_AA_metabolism	Putative	83,445	109,526

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_2); c00004_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_4); c00005_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_5); c00007_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_7); c00008_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_8); c00009_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_9); c00010_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_10); c00011_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_11); c00012_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_12); c00013_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_13); c00014_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_14); c00015_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_15); c00016_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_16); c00017_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_17); c00018_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_18); c00019_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_19); c00020_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_20); c00021_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_21); c00023_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_23); c00024_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_24); c00025_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_25); c00026_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_26); c00027_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_27); c00028_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_28); c00029_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_29); c00030_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_30); c00031_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_31); c00032_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_32); c00034_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_34); c00035_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_35); c00036_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_36); c00037_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_37); c00038_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_38); c00039_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_39); c00040_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_40); c00041_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_41); c00042_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_42); c00043_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_43); c00045_gnlPro.. (original name was: gnl|Prokka|NIHJBLIN_45)

Compact view

c00001_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 78,571 - 101,526 nt. (total: 22,956 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00003_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 46,391 - 69,948 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00006_gnlPro.. - Region 1 - Rnf_complex

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Location: 34,324 - 59,558 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00022_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 259,542 - 289,773 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00033_gnlPro.. - Region 1 - porA

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Location: 208,983 - 231,826 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00033_gnlPro.. - Region 2 - succinate2propionate

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Location: 303,656 - 328,362 nt. (total: 24,707 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00044_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 83,445 - 109,526 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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