Select genomic region:
Overview
3.1
22.1
55.1
55.2
65.1
66.1

### Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaNMOHCABM_3 (original name was: gnl|Prokka|NMOHCABM_3)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 3.1 | RRE-containing | 79,342 | 99,608 |

gnlProkkaNMOHCABM_22 (original name was: gnl|Prokka|NMOHCABM_22)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 22.1 | phosphonate | 156,216 | 189,908 | polysaccharide B | Saccharide | 16%

gnlProkkaNMOHCABM_55 (original name was: gnl|Prokka|NMOHCABM_55)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 55.1 | thiopeptide | 163,122 | 189,443 |
Region 55.2 | phosphonate | 309,616 | 334,641 | polysaccharide B | Saccharide | 10%

gnlProkkaNMOHCABM_65 (original name was: gnl|Prokka|NMOHCABM_65)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 65.1 | betalactone | 172,323 | 195,080 |

gnlProkkaNMOHCABM_66 (original name was: gnl|Prokka|NMOHCABM_66)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 66.1 | RRE-containing | 213,235 | 230,050 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 3.1 | RRE-containing | 79,342 | 99,608 |
Region 22.1 | phosphonate | 156,216 | 189,908 | polysaccharide B | Saccharide | 16%
Region 55.1 | thiopeptide | 163,122 | 189,443 |
Region 55.2 | phosphonate | 309,616 | 334,641 | polysaccharide B | Saccharide | 10%
Region 65.1 | betalactone | 172,323 | 195,080 |
Region 66.1 | RRE-containing | 213,235 | 230,050 |

No secondary metabolite regions were found in these records:
  gnlProkkaNMOHCABM_1 (original name was: gnl|Prokka|NMOHCABM_1)
  gnlProkkaNMOHCABM_2 (original name was: gnl|Prokka|NMOHCABM_2)
  gnlProkkaNMOHCABM_4 (original name was: gnl|Prokka|NMOHCABM_4)
  gnlProkkaNMOHCABM_5 (original name was: gnl|Prokka|NMOHCABM_5)
  gnlProkkaNMOHCABM_6 (original name was: gnl|Prokka|NMOHCABM_6)
  gnlProkkaNMOHCABM_7 (original name was: gnl|Prokka|NMOHCABM_7)
  gnlProkkaNMOHCABM_8 (original name was: gnl|Prokka|NMOHCABM_8)
  gnlProkkaNMOHCABM_9 (original name was: gnl|Prokka|NMOHCABM_9)
  gnlProkkaNMOHCABM_10 (original name was: gnl|Prokka|NMOHCABM_10)
  gnlProkkaNMOHCABM_11 (original name was: gnl|Prokka|NMOHCABM_11)
  gnlProkkaNMOHCABM_12 (original name was: gnl|Prokka|NMOHCABM_12)
  gnlProkkaNMOHCABM_13 (original name was: gnl|Prokka|NMOHCABM_13)
  gnlProkkaNMOHCABM_14 (original name was: gnl|Prokka|NMOHCABM_14)
  gnlProkkaNMOHCABM_15 (original name was: gnl|Prokka|NMOHCABM_15)
  gnlProkkaNMOHCABM_16 (original name was: gnl|Prokka|NMOHCABM_16)
  gnlProkkaNMOHCABM_17 (original name was: gnl|Prokka|NMOHCABM_17)
  gnlProkkaNMOHCABM_18 (original name was: gnl|Prokka|NMOHCABM_18)
  gnlProkkaNMOHCABM_19 (original name was: gnl|Prokka|NMOHCABM_19)
  gnlProkkaNMOHCABM_20 (original name was: gnl|Prokka|NMOHCABM_20)
  gnlProkkaNMOHCABM_21 (original name was: gnl|Prokka|NMOHCABM_21)
  gnlProkkaNMOHCABM_23 (original name was: gnl|Prokka|NMOHCABM_23)
  gnlProkkaNMOHCABM_24 (original name was: gnl|Prokka|NMOHCABM_24)
  gnlProkkaNMOHCABM_25 (original name was: gnl|Prokka|NMOHCABM_25)
  gnlProkkaNMOHCABM_26 (original name was: gnl|Prokka|NMOHCABM_26)
  gnlProkkaNMOHCABM_27 (original name was: gnl|Prokka|NMOHCABM_27)
  gnlProkkaNMOHCABM_28 (original name was: gnl|Prokka|NMOHCABM_28)
  gnlProkkaNMOHCABM_29 (original name was: gnl|Prokka|NMOHCABM_29)
  gnlProkkaNMOHCABM_30 (original name was: gnl|Prokka|NMOHCABM_30)
  gnlProkkaNMOHCABM_31 (original name was: gnl|Prokka|NMOHCABM_31)
  gnlProkkaNMOHCABM_32 (original name was: gnl|Prokka|NMOHCABM_32)
  gnlProkkaNMOHCABM_33 (original name was: gnl|Prokka|NMOHCABM_33)
  gnlProkkaNMOHCABM_34 (original name was: gnl|Prokka|NMOHCABM_34)
  gnlProkkaNMOHCABM_35 (original name was: gnl|Prokka|NMOHCABM_35)
  gnlProkkaNMOHCABM_36 (original name was: gnl|Prokka|NMOHCABM_36)
  gnlProkkaNMOHCABM_37 (original name was: gnl|Prokka|NMOHCABM_37)
  gnlProkkaNMOHCABM_38 (original name was: gnl|Prokka|NMOHCABM_38)
  gnlProkkaNMOHCABM_39 (original name was: gnl|Prokka|NMOHCABM_39)
  gnlProkkaNMOHCABM_40 (original name was: gnl|Prokka|NMOHCABM_40)
  gnlProkkaNMOHCABM_41 (original name was: gnl|Prokka|NMOHCABM_41)
  gnlProkkaNMOHCABM_42 (original name was: gnl|Prokka|NMOHCABM_42)
  gnlProkkaNMOHCABM_43 (original name was: gnl|Prokka|NMOHCABM_43)
  gnlProkkaNMOHCABM_44 (original name was: gnl|Prokka|NMOHCABM_44)
  gnlProkkaNMOHCABM_45 (original name was: gnl|Prokka|NMOHCABM_45)
  gnlProkkaNMOHCABM_46 (original name was: gnl|Prokka|NMOHCABM_46)
  gnlProkkaNMOHCABM_47 (original name was: gnl|Prokka|NMOHCABM_47)
  gnlProkkaNMOHCABM_48 (original name was: gnl|Prokka|NMOHCABM_48)
  gnlProkkaNMOHCABM_49 (original name was: gnl|Prokka|NMOHCABM_49)
  gnlProkkaNMOHCABM_50 (original name was: gnl|Prokka|NMOHCABM_50)
  gnlProkkaNMOHCABM_51 (original name was: gnl|Prokka|NMOHCABM_51)
  gnlProkkaNMOHCABM_52 (original name was: gnl|Prokka|NMOHCABM_52)
  gnlProkkaNMOHCABM_53 (original name was: gnl|Prokka|NMOHCABM_53)
  gnlProkkaNMOHCABM_54 (original name was: gnl|Prokka|NMOHCABM_54)
  gnlProkkaNMOHCABM_56 (original name was: gnl|Prokka|NMOHCABM_56)
  gnlProkkaNMOHCABM_57 (original name was: gnl|Prokka|NMOHCABM_57)
  gnlProkkaNMOHCABM_58 (original name was: gnl|Prokka|NMOHCABM_58)
  gnlProkkaNMOHCABM_59 (original name was: gnl|Prokka|NMOHCABM_59)
  gnlProkkaNMOHCABM_60 (original name was: gnl|Prokka|NMOHCABM_60)
  gnlProkkaNMOHCABM_61 (original name was: gnl|Prokka|NMOHCABM_61)
  gnlProkkaNMOHCABM_62 (original name was: gnl|Prokka|NMOHCABM_62)
  gnlProkkaNMOHCABM_63 (original name was: gnl|Prokka|NMOHCABM_63)
  gnlProkkaNMOHCABM_64 (original name was: gnl|Prokka|NMOHCABM_64)

Compact view
gnlProkkaNMOHCABM_3 - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 79,342 - 99,608 nt. (total: 20,267 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

gnlProkkaNMOHCABM_22 - Region 1 - phosphonate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 156,216 - 189,908 nt. (total: 33,693 nt) Show pHMM detection rules used
phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
gnlProkkaNMOHCABM_55 - Region 1 - thiopeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 163,122 - 189,443 nt. (total: 26,322 nt) Show pHMM detection rules used
thiopeptide: ((YcaO or TIGR03604) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Thiopeptides
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Thiopeptide predictions
Lists the possible core peptides for each biosynthetic enzyme. Predicted tail sequences are also shown, if present.
Includes CompaRiPPson results for any available databases, with a detailed explanation here.
No core peptides found.
Thiopeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists its possible molecular weights and the scores for cleavage site prediction and RODEO. If relevant, other features, such as macrocycle and amidation, will also be listed.
No core peptides found.
gnlProkkaNMOHCABM_55 - Region 2 - phosphonate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 309,616 - 334,641 nt. (total: 25,026 nt) Show pHMM detection rules used
phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
gnlProkkaNMOHCABM_65 - Region 1 - betalactone
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 172,323 - 195,080 nt. (total: 22,758 nt) Show pHMM detection rules used
betalactone: (HMGL-like and AMP-binding)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

gnlProkkaNMOHCABM_66 - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 213,235 - 230,050 nt. (total: 16,816 nt) Show pHMM detection rules used
Region on contig edge.
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.