GCA_028398175.1 - 8 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Fumarate2succinate	SCFA	85,455	108,925	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00007_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	PFOR_II_pathway	SCFA	51,641	75,198	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00022_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_22)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_AA_metabolism	Putative	295,273	321,354

c00023_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Rnf_complex	E-MGC	21,799	47,033	Rnf complex C. sporogenes	RNF	83%

c00033_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_33)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	NADH_dehydrogenase_I	E-MGC	121,900	152,131	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00036_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_36)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 36.1	Pyruvate2acetate-formate	SCFA	1	13,660	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00080_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_80)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 80.1	succinate2propionate	SCFA	35,602	60,310	Succinate to propionate B. theta	PRO	75%
Region 80.2	porA	SCFA	131,999	154,842	porA C. sporogenes	POR	80%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_1); c00003_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_3); c00004_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_4); c00005_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_5); c00006_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_6); c00008_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_8); c00009_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_9); c00010_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_10); c00011_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_11); c00012_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_12); c00013_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_13); c00014_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_14); c00015_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_15); c00016_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_16); c00017_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_17); c00018_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_18); c00019_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_19); c00020_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_20); c00021_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_21); c00024_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_24); c00025_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_25); c00026_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_26); c00027_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_27); c00028_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_28); c00029_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_29); c00030_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_30); c00031_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_31); c00032_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_32); c00034_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_34); c00035_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_35); c00037_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_37); c00038_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_38); c00039_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_39); c00040_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_40); c00041_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_41); c00042_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_42); c00043_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_43); c00044_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_44); c00045_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_45); c00046_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_46); c00047_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_47); c00048_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_48); c00049_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_49); c00050_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_50); c00051_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_51); c00052_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_52); c00053_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_53); c00054_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_54); c00055_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_55); c00056_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_56); c00057_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_57); c00058_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_58); c00059_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_59); c00060_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_60); c00061_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_61); c00062_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_62); c00063_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_63); c00064_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_64); c00065_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_65); c00066_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_66); c00067_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_67); c00068_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_68); c00069_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_69); c00070_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_70); c00071_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_71); c00072_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_72); c00073_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_73); c00074_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_74); c00075_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_75); c00076_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_76); c00077_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_77); c00078_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_78); c00079_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_79); c00081_gnlPro.. (original name was: gnl|Prokka|IODIJMFA_81)

Compact view

c00002_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 85,455 - 108,925 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00007_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 51,641 - 75,198 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

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resistance genes

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c00022_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 295,273 - 321,354 nt. (total: 26,082 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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regulatory genes

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No matches found.

c00023_gnlPro.. - Region 1 - Rnf_complex

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Location: 21,799 - 47,033 nt. (total: 25,235 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

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c00033_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 121,900 - 152,131 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00036_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 13,660 nt. (total: 13,660 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00080_gnlPro.. - Region 1 - succinate2propionate

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Location: 35,602 - 60,310 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00080_gnlPro.. - Region 2 - porA

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Location: 131,999 - 154,842 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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electron transport genes

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Gene details

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