GCA_028400005.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJFLDGKGE_22 (original name was: gnl|Prokka|JFLDGKGE_22)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	arylpolyene	127,406	175,010	flexirubin	Other	48%

gnlProkkaJFLDGKGE_36 (original name was: gnl|Prokka|JFLDGKGE_36)

Region	Type	From	To	Most similar known cluster		Similarity
Region 36.1	RRE-containing	103,687	124,037

No secondary metabolite regions were found in these records:: gnlProkkaJFLDGKGE_1 (original name was: gnl|Prokka|JFLDGKGE_1); gnlProkkaJFLDGKGE_2 (original name was: gnl|Prokka|JFLDGKGE_2); gnlProkkaJFLDGKGE_3 (original name was: gnl|Prokka|JFLDGKGE_3); gnlProkkaJFLDGKGE_4 (original name was: gnl|Prokka|JFLDGKGE_4); gnlProkkaJFLDGKGE_5 (original name was: gnl|Prokka|JFLDGKGE_5); gnlProkkaJFLDGKGE_6 (original name was: gnl|Prokka|JFLDGKGE_6); gnlProkkaJFLDGKGE_7 (original name was: gnl|Prokka|JFLDGKGE_7); gnlProkkaJFLDGKGE_8 (original name was: gnl|Prokka|JFLDGKGE_8); gnlProkkaJFLDGKGE_9 (original name was: gnl|Prokka|JFLDGKGE_9); gnlProkkaJFLDGKGE_10 (original name was: gnl|Prokka|JFLDGKGE_10); gnlProkkaJFLDGKGE_11 (original name was: gnl|Prokka|JFLDGKGE_11); gnlProkkaJFLDGKGE_12 (original name was: gnl|Prokka|JFLDGKGE_12); gnlProkkaJFLDGKGE_13 (original name was: gnl|Prokka|JFLDGKGE_13); gnlProkkaJFLDGKGE_14 (original name was: gnl|Prokka|JFLDGKGE_14); gnlProkkaJFLDGKGE_15 (original name was: gnl|Prokka|JFLDGKGE_15); gnlProkkaJFLDGKGE_16 (original name was: gnl|Prokka|JFLDGKGE_16); gnlProkkaJFLDGKGE_17 (original name was: gnl|Prokka|JFLDGKGE_17); gnlProkkaJFLDGKGE_18 (original name was: gnl|Prokka|JFLDGKGE_18); gnlProkkaJFLDGKGE_19 (original name was: gnl|Prokka|JFLDGKGE_19); gnlProkkaJFLDGKGE_20 (original name was: gnl|Prokka|JFLDGKGE_20); gnlProkkaJFLDGKGE_21 (original name was: gnl|Prokka|JFLDGKGE_21); gnlProkkaJFLDGKGE_23 (original name was: gnl|Prokka|JFLDGKGE_23); gnlProkkaJFLDGKGE_24 (original name was: gnl|Prokka|JFLDGKGE_24); gnlProkkaJFLDGKGE_25 (original name was: gnl|Prokka|JFLDGKGE_25); gnlProkkaJFLDGKGE_26 (original name was: gnl|Prokka|JFLDGKGE_26); gnlProkkaJFLDGKGE_27 (original name was: gnl|Prokka|JFLDGKGE_27); gnlProkkaJFLDGKGE_28 (original name was: gnl|Prokka|JFLDGKGE_28); gnlProkkaJFLDGKGE_29 (original name was: gnl|Prokka|JFLDGKGE_29); gnlProkkaJFLDGKGE_30 (original name was: gnl|Prokka|JFLDGKGE_30); gnlProkkaJFLDGKGE_31 (original name was: gnl|Prokka|JFLDGKGE_31); gnlProkkaJFLDGKGE_32 (original name was: gnl|Prokka|JFLDGKGE_32); gnlProkkaJFLDGKGE_33 (original name was: gnl|Prokka|JFLDGKGE_33); gnlProkkaJFLDGKGE_34 (original name was: gnl|Prokka|JFLDGKGE_34); gnlProkkaJFLDGKGE_35 (original name was: gnl|Prokka|JFLDGKGE_35); gnlProkkaJFLDGKGE_37 (original name was: gnl|Prokka|JFLDGKGE_37); gnlProkkaJFLDGKGE_38 (original name was: gnl|Prokka|JFLDGKGE_38)

Compact view

gnlProkkaJFLDGKGE_22 - Region 1 - arylpolyene

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Location: 127,406 - 175,010 nt. (total: 47,605 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

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core biosynthetic genes

additional biosynthetic genes

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg22_112

AMP-binding (17..335): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMIITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

gnlProkkaJFLDGKGE_36 - Region 1 - RRE-containing

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Location: 103,687 - 124,037 nt. (total: 20,351 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.