GCA_028400245.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaNJJFPLHO_6 (original name was: gnl|Prokka|NJJFPLHO_6)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	RRE-containing	109,701	130,051

gnlProkkaNJJFPLHO_10 (original name was: gnl|Prokka|NJJFPLHO_10)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	arylpolyene	73,414	121,018	flexirubin	Other	48%

Region	Type	From	To	Most similar known cluster	Similarity
Region 6.1	RRE-containing	109,701	130,051
Region 10.1	arylpolyene	73,414	121,018	flexirubin	Other	48%

No secondary metabolite regions were found in these records:: gnlProkkaNJJFPLHO_1 (original name was: gnl|Prokka|NJJFPLHO_1); gnlProkkaNJJFPLHO_2 (original name was: gnl|Prokka|NJJFPLHO_2); gnlProkkaNJJFPLHO_3 (original name was: gnl|Prokka|NJJFPLHO_3); gnlProkkaNJJFPLHO_4 (original name was: gnl|Prokka|NJJFPLHO_4); gnlProkkaNJJFPLHO_5 (original name was: gnl|Prokka|NJJFPLHO_5); gnlProkkaNJJFPLHO_7 (original name was: gnl|Prokka|NJJFPLHO_7); gnlProkkaNJJFPLHO_8 (original name was: gnl|Prokka|NJJFPLHO_8); gnlProkkaNJJFPLHO_9 (original name was: gnl|Prokka|NJJFPLHO_9); gnlProkkaNJJFPLHO_11 (original name was: gnl|Prokka|NJJFPLHO_11); gnlProkkaNJJFPLHO_12 (original name was: gnl|Prokka|NJJFPLHO_12); gnlProkkaNJJFPLHO_13 (original name was: gnl|Prokka|NJJFPLHO_13); gnlProkkaNJJFPLHO_14 (original name was: gnl|Prokka|NJJFPLHO_14); gnlProkkaNJJFPLHO_15 (original name was: gnl|Prokka|NJJFPLHO_15); gnlProkkaNJJFPLHO_16 (original name was: gnl|Prokka|NJJFPLHO_16); gnlProkkaNJJFPLHO_17 (original name was: gnl|Prokka|NJJFPLHO_17); gnlProkkaNJJFPLHO_18 (original name was: gnl|Prokka|NJJFPLHO_18); gnlProkkaNJJFPLHO_19 (original name was: gnl|Prokka|NJJFPLHO_19); gnlProkkaNJJFPLHO_20 (original name was: gnl|Prokka|NJJFPLHO_20); gnlProkkaNJJFPLHO_21 (original name was: gnl|Prokka|NJJFPLHO_21); gnlProkkaNJJFPLHO_22 (original name was: gnl|Prokka|NJJFPLHO_22); gnlProkkaNJJFPLHO_23 (original name was: gnl|Prokka|NJJFPLHO_23); gnlProkkaNJJFPLHO_24 (original name was: gnl|Prokka|NJJFPLHO_24); gnlProkkaNJJFPLHO_25 (original name was: gnl|Prokka|NJJFPLHO_25); gnlProkkaNJJFPLHO_26 (original name was: gnl|Prokka|NJJFPLHO_26); gnlProkkaNJJFPLHO_27 (original name was: gnl|Prokka|NJJFPLHO_27); gnlProkkaNJJFPLHO_28 (original name was: gnl|Prokka|NJJFPLHO_28); gnlProkkaNJJFPLHO_29 (original name was: gnl|Prokka|NJJFPLHO_29); gnlProkkaNJJFPLHO_30 (original name was: gnl|Prokka|NJJFPLHO_30); gnlProkkaNJJFPLHO_31 (original name was: gnl|Prokka|NJJFPLHO_31); gnlProkkaNJJFPLHO_32 (original name was: gnl|Prokka|NJJFPLHO_32); gnlProkkaNJJFPLHO_33 (original name was: gnl|Prokka|NJJFPLHO_33); gnlProkkaNJJFPLHO_34 (original name was: gnl|Prokka|NJJFPLHO_34); gnlProkkaNJJFPLHO_35 (original name was: gnl|Prokka|NJJFPLHO_35); gnlProkkaNJJFPLHO_36 (original name was: gnl|Prokka|NJJFPLHO_36); gnlProkkaNJJFPLHO_37 (original name was: gnl|Prokka|NJJFPLHO_37); gnlProkkaNJJFPLHO_38 (original name was: gnl|Prokka|NJJFPLHO_38); gnlProkkaNJJFPLHO_39 (original name was: gnl|Prokka|NJJFPLHO_39); gnlProkkaNJJFPLHO_40 (original name was: gnl|Prokka|NJJFPLHO_40); gnlProkkaNJJFPLHO_41 (original name was: gnl|Prokka|NJJFPLHO_41); gnlProkkaNJJFPLHO_42 (original name was: gnl|Prokka|NJJFPLHO_42); gnlProkkaNJJFPLHO_43 (original name was: gnl|Prokka|NJJFPLHO_43); gnlProkkaNJJFPLHO_44 (original name was: gnl|Prokka|NJJFPLHO_44)

Compact view

gnlProkkaNJJFPLHO_6 - Region 1 - RRE-containing

Download region GenBank file

Download region SVG

Location: 109,701 - 130,051 nt. (total: 20,351 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNJJFPLHO_10 - Region 1 - arylpolyene

Download region GenBank file

Download region SVG

Location: 73,414 - 121,018 nt. (total: 47,605 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg10_70

AMP-binding (48..308): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMIITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)