GCA_028400385.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJPKDGJDG_22 (original name was: gnl|Prokka|JPKDGJDG_22)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	arylpolyene	307,423	355,027	flexirubin	Other	48%

gnlProkkaJPKDGJDG_35 (original name was: gnl|Prokka|JPKDGJDG_35)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	RRE-containing	226,075	246,425

No secondary metabolite regions were found in these records:: gnlProkkaJPKDGJDG_1 (original name was: gnl|Prokka|JPKDGJDG_1); gnlProkkaJPKDGJDG_2 (original name was: gnl|Prokka|JPKDGJDG_2); gnlProkkaJPKDGJDG_3 (original name was: gnl|Prokka|JPKDGJDG_3); gnlProkkaJPKDGJDG_4 (original name was: gnl|Prokka|JPKDGJDG_4); gnlProkkaJPKDGJDG_5 (original name was: gnl|Prokka|JPKDGJDG_5); gnlProkkaJPKDGJDG_6 (original name was: gnl|Prokka|JPKDGJDG_6); gnlProkkaJPKDGJDG_7 (original name was: gnl|Prokka|JPKDGJDG_7); gnlProkkaJPKDGJDG_8 (original name was: gnl|Prokka|JPKDGJDG_8); gnlProkkaJPKDGJDG_9 (original name was: gnl|Prokka|JPKDGJDG_9); gnlProkkaJPKDGJDG_10 (original name was: gnl|Prokka|JPKDGJDG_10); gnlProkkaJPKDGJDG_11 (original name was: gnl|Prokka|JPKDGJDG_11); gnlProkkaJPKDGJDG_12 (original name was: gnl|Prokka|JPKDGJDG_12); gnlProkkaJPKDGJDG_13 (original name was: gnl|Prokka|JPKDGJDG_13); gnlProkkaJPKDGJDG_14 (original name was: gnl|Prokka|JPKDGJDG_14); gnlProkkaJPKDGJDG_15 (original name was: gnl|Prokka|JPKDGJDG_15); gnlProkkaJPKDGJDG_16 (original name was: gnl|Prokka|JPKDGJDG_16); gnlProkkaJPKDGJDG_17 (original name was: gnl|Prokka|JPKDGJDG_17); gnlProkkaJPKDGJDG_18 (original name was: gnl|Prokka|JPKDGJDG_18); gnlProkkaJPKDGJDG_19 (original name was: gnl|Prokka|JPKDGJDG_19); gnlProkkaJPKDGJDG_20 (original name was: gnl|Prokka|JPKDGJDG_20); gnlProkkaJPKDGJDG_21 (original name was: gnl|Prokka|JPKDGJDG_21); gnlProkkaJPKDGJDG_23 (original name was: gnl|Prokka|JPKDGJDG_23); gnlProkkaJPKDGJDG_24 (original name was: gnl|Prokka|JPKDGJDG_24); gnlProkkaJPKDGJDG_25 (original name was: gnl|Prokka|JPKDGJDG_25); gnlProkkaJPKDGJDG_26 (original name was: gnl|Prokka|JPKDGJDG_26); gnlProkkaJPKDGJDG_27 (original name was: gnl|Prokka|JPKDGJDG_27); gnlProkkaJPKDGJDG_28 (original name was: gnl|Prokka|JPKDGJDG_28); gnlProkkaJPKDGJDG_29 (original name was: gnl|Prokka|JPKDGJDG_29); gnlProkkaJPKDGJDG_30 (original name was: gnl|Prokka|JPKDGJDG_30); gnlProkkaJPKDGJDG_31 (original name was: gnl|Prokka|JPKDGJDG_31); gnlProkkaJPKDGJDG_32 (original name was: gnl|Prokka|JPKDGJDG_32); gnlProkkaJPKDGJDG_33 (original name was: gnl|Prokka|JPKDGJDG_33); gnlProkkaJPKDGJDG_34 (original name was: gnl|Prokka|JPKDGJDG_34); gnlProkkaJPKDGJDG_36 (original name was: gnl|Prokka|JPKDGJDG_36); gnlProkkaJPKDGJDG_37 (original name was: gnl|Prokka|JPKDGJDG_37); gnlProkkaJPKDGJDG_38 (original name was: gnl|Prokka|JPKDGJDG_38); gnlProkkaJPKDGJDG_39 (original name was: gnl|Prokka|JPKDGJDG_39); gnlProkkaJPKDGJDG_40 (original name was: gnl|Prokka|JPKDGJDG_40)

Compact view

gnlProkkaJPKDGJDG_22 - Region 1 - arylpolyene

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Location: 307,423 - 355,027 nt. (total: 47,605 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg22_228

AMP-binding (17..335): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMIITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

gnlProkkaJPKDGJDG_35 - Region 1 - RRE-containing

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Location: 226,075 - 246,425 nt. (total: 20,351 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.