GCA_028400445.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJMGHFNPA_33 (original name was: gnl|Prokka|JMGHFNPA_33)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	arylpolyene	307,423	355,027	flexirubin	Other	48%

gnlProkkaJMGHFNPA_41 (original name was: gnl|Prokka|JMGHFNPA_41)

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	RRE-containing	103,687	124,037

No secondary metabolite regions were found in these records:: gnlProkkaJMGHFNPA_1 (original name was: gnl|Prokka|JMGHFNPA_1); gnlProkkaJMGHFNPA_2 (original name was: gnl|Prokka|JMGHFNPA_2); gnlProkkaJMGHFNPA_3 (original name was: gnl|Prokka|JMGHFNPA_3); gnlProkkaJMGHFNPA_4 (original name was: gnl|Prokka|JMGHFNPA_4); gnlProkkaJMGHFNPA_5 (original name was: gnl|Prokka|JMGHFNPA_5); gnlProkkaJMGHFNPA_6 (original name was: gnl|Prokka|JMGHFNPA_6); gnlProkkaJMGHFNPA_7 (original name was: gnl|Prokka|JMGHFNPA_7); gnlProkkaJMGHFNPA_8 (original name was: gnl|Prokka|JMGHFNPA_8); gnlProkkaJMGHFNPA_9 (original name was: gnl|Prokka|JMGHFNPA_9); gnlProkkaJMGHFNPA_10 (original name was: gnl|Prokka|JMGHFNPA_10); gnlProkkaJMGHFNPA_11 (original name was: gnl|Prokka|JMGHFNPA_11); gnlProkkaJMGHFNPA_12 (original name was: gnl|Prokka|JMGHFNPA_12); gnlProkkaJMGHFNPA_13 (original name was: gnl|Prokka|JMGHFNPA_13); gnlProkkaJMGHFNPA_14 (original name was: gnl|Prokka|JMGHFNPA_14); gnlProkkaJMGHFNPA_15 (original name was: gnl|Prokka|JMGHFNPA_15); gnlProkkaJMGHFNPA_16 (original name was: gnl|Prokka|JMGHFNPA_16); gnlProkkaJMGHFNPA_17 (original name was: gnl|Prokka|JMGHFNPA_17); gnlProkkaJMGHFNPA_18 (original name was: gnl|Prokka|JMGHFNPA_18); gnlProkkaJMGHFNPA_19 (original name was: gnl|Prokka|JMGHFNPA_19); gnlProkkaJMGHFNPA_20 (original name was: gnl|Prokka|JMGHFNPA_20); gnlProkkaJMGHFNPA_21 (original name was: gnl|Prokka|JMGHFNPA_21); gnlProkkaJMGHFNPA_22 (original name was: gnl|Prokka|JMGHFNPA_22); gnlProkkaJMGHFNPA_23 (original name was: gnl|Prokka|JMGHFNPA_23); gnlProkkaJMGHFNPA_24 (original name was: gnl|Prokka|JMGHFNPA_24); gnlProkkaJMGHFNPA_25 (original name was: gnl|Prokka|JMGHFNPA_25); gnlProkkaJMGHFNPA_26 (original name was: gnl|Prokka|JMGHFNPA_26); gnlProkkaJMGHFNPA_27 (original name was: gnl|Prokka|JMGHFNPA_27); gnlProkkaJMGHFNPA_28 (original name was: gnl|Prokka|JMGHFNPA_28); gnlProkkaJMGHFNPA_29 (original name was: gnl|Prokka|JMGHFNPA_29); gnlProkkaJMGHFNPA_30 (original name was: gnl|Prokka|JMGHFNPA_30); gnlProkkaJMGHFNPA_31 (original name was: gnl|Prokka|JMGHFNPA_31); gnlProkkaJMGHFNPA_32 (original name was: gnl|Prokka|JMGHFNPA_32); gnlProkkaJMGHFNPA_34 (original name was: gnl|Prokka|JMGHFNPA_34); gnlProkkaJMGHFNPA_35 (original name was: gnl|Prokka|JMGHFNPA_35); gnlProkkaJMGHFNPA_36 (original name was: gnl|Prokka|JMGHFNPA_36); gnlProkkaJMGHFNPA_37 (original name was: gnl|Prokka|JMGHFNPA_37); gnlProkkaJMGHFNPA_38 (original name was: gnl|Prokka|JMGHFNPA_38); gnlProkkaJMGHFNPA_39 (original name was: gnl|Prokka|JMGHFNPA_39); gnlProkkaJMGHFNPA_40 (original name was: gnl|Prokka|JMGHFNPA_40); gnlProkkaJMGHFNPA_42 (original name was: gnl|Prokka|JMGHFNPA_42); gnlProkkaJMGHFNPA_43 (original name was: gnl|Prokka|JMGHFNPA_43); gnlProkkaJMGHFNPA_44 (original name was: gnl|Prokka|JMGHFNPA_44)

Compact view

gnlProkkaJMGHFNPA_33 - Region 1 - arylpolyene

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Location: 307,423 - 355,027 nt. (total: 47,605 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg33_228

AMP-binding (17..335): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMIITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

gnlProkkaJMGHFNPA_41 - Region 1 - RRE-containing

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Location: 103,687 - 124,037 nt. (total: 20,351 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.