GCA_028400705.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGHJGDHKK_16 (original name was: gnl|Prokka|GHJGDHKK_16)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	arylpolyene	1	45,878	flexirubin	Other	48%

gnlProkkaGHJGDHKK_63 (original name was: gnl|Prokka|GHJGDHKK_63)

Region	Type	From	To	Most similar known cluster		Similarity
Region 63.1	RRE-containing	170,141	190,491

No secondary metabolite regions were found in these records:: gnlProkkaGHJGDHKK_1 (original name was: gnl|Prokka|GHJGDHKK_1); gnlProkkaGHJGDHKK_2 (original name was: gnl|Prokka|GHJGDHKK_2); gnlProkkaGHJGDHKK_3 (original name was: gnl|Prokka|GHJGDHKK_3); gnlProkkaGHJGDHKK_4 (original name was: gnl|Prokka|GHJGDHKK_4); gnlProkkaGHJGDHKK_5 (original name was: gnl|Prokka|GHJGDHKK_5); gnlProkkaGHJGDHKK_6 (original name was: gnl|Prokka|GHJGDHKK_6); gnlProkkaGHJGDHKK_7 (original name was: gnl|Prokka|GHJGDHKK_7); gnlProkkaGHJGDHKK_8 (original name was: gnl|Prokka|GHJGDHKK_8); gnlProkkaGHJGDHKK_9 (original name was: gnl|Prokka|GHJGDHKK_9); gnlProkkaGHJGDHKK_10 (original name was: gnl|Prokka|GHJGDHKK_10); gnlProkkaGHJGDHKK_11 (original name was: gnl|Prokka|GHJGDHKK_11); gnlProkkaGHJGDHKK_12 (original name was: gnl|Prokka|GHJGDHKK_12); gnlProkkaGHJGDHKK_13 (original name was: gnl|Prokka|GHJGDHKK_13); gnlProkkaGHJGDHKK_14 (original name was: gnl|Prokka|GHJGDHKK_14); gnlProkkaGHJGDHKK_15 (original name was: gnl|Prokka|GHJGDHKK_15); gnlProkkaGHJGDHKK_17 (original name was: gnl|Prokka|GHJGDHKK_17); gnlProkkaGHJGDHKK_18 (original name was: gnl|Prokka|GHJGDHKK_18); gnlProkkaGHJGDHKK_19 (original name was: gnl|Prokka|GHJGDHKK_19); gnlProkkaGHJGDHKK_20 (original name was: gnl|Prokka|GHJGDHKK_20); gnlProkkaGHJGDHKK_21 (original name was: gnl|Prokka|GHJGDHKK_21); gnlProkkaGHJGDHKK_22 (original name was: gnl|Prokka|GHJGDHKK_22); gnlProkkaGHJGDHKK_23 (original name was: gnl|Prokka|GHJGDHKK_23); gnlProkkaGHJGDHKK_24 (original name was: gnl|Prokka|GHJGDHKK_24); gnlProkkaGHJGDHKK_25 (original name was: gnl|Prokka|GHJGDHKK_25); gnlProkkaGHJGDHKK_26 (original name was: gnl|Prokka|GHJGDHKK_26); gnlProkkaGHJGDHKK_27 (original name was: gnl|Prokka|GHJGDHKK_27); gnlProkkaGHJGDHKK_28 (original name was: gnl|Prokka|GHJGDHKK_28); gnlProkkaGHJGDHKK_29 (original name was: gnl|Prokka|GHJGDHKK_29); gnlProkkaGHJGDHKK_30 (original name was: gnl|Prokka|GHJGDHKK_30); gnlProkkaGHJGDHKK_31 (original name was: gnl|Prokka|GHJGDHKK_31); gnlProkkaGHJGDHKK_32 (original name was: gnl|Prokka|GHJGDHKK_32); gnlProkkaGHJGDHKK_33 (original name was: gnl|Prokka|GHJGDHKK_33); gnlProkkaGHJGDHKK_34 (original name was: gnl|Prokka|GHJGDHKK_34); gnlProkkaGHJGDHKK_35 (original name was: gnl|Prokka|GHJGDHKK_35); gnlProkkaGHJGDHKK_36 (original name was: gnl|Prokka|GHJGDHKK_36); gnlProkkaGHJGDHKK_37 (original name was: gnl|Prokka|GHJGDHKK_37); gnlProkkaGHJGDHKK_38 (original name was: gnl|Prokka|GHJGDHKK_38); gnlProkkaGHJGDHKK_39 (original name was: gnl|Prokka|GHJGDHKK_39); gnlProkkaGHJGDHKK_40 (original name was: gnl|Prokka|GHJGDHKK_40); gnlProkkaGHJGDHKK_41 (original name was: gnl|Prokka|GHJGDHKK_41); gnlProkkaGHJGDHKK_42 (original name was: gnl|Prokka|GHJGDHKK_42); gnlProkkaGHJGDHKK_43 (original name was: gnl|Prokka|GHJGDHKK_43); gnlProkkaGHJGDHKK_44 (original name was: gnl|Prokka|GHJGDHKK_44); gnlProkkaGHJGDHKK_45 (original name was: gnl|Prokka|GHJGDHKK_45); gnlProkkaGHJGDHKK_46 (original name was: gnl|Prokka|GHJGDHKK_46); gnlProkkaGHJGDHKK_47 (original name was: gnl|Prokka|GHJGDHKK_47); gnlProkkaGHJGDHKK_48 (original name was: gnl|Prokka|GHJGDHKK_48); gnlProkkaGHJGDHKK_49 (original name was: gnl|Prokka|GHJGDHKK_49); gnlProkkaGHJGDHKK_50 (original name was: gnl|Prokka|GHJGDHKK_50); gnlProkkaGHJGDHKK_51 (original name was: gnl|Prokka|GHJGDHKK_51); gnlProkkaGHJGDHKK_52 (original name was: gnl|Prokka|GHJGDHKK_52); gnlProkkaGHJGDHKK_53 (original name was: gnl|Prokka|GHJGDHKK_53); gnlProkkaGHJGDHKK_54 (original name was: gnl|Prokka|GHJGDHKK_54); gnlProkkaGHJGDHKK_55 (original name was: gnl|Prokka|GHJGDHKK_55); gnlProkkaGHJGDHKK_56 (original name was: gnl|Prokka|GHJGDHKK_56); gnlProkkaGHJGDHKK_57 (original name was: gnl|Prokka|GHJGDHKK_57); gnlProkkaGHJGDHKK_58 (original name was: gnl|Prokka|GHJGDHKK_58); gnlProkkaGHJGDHKK_59 (original name was: gnl|Prokka|GHJGDHKK_59); gnlProkkaGHJGDHKK_60 (original name was: gnl|Prokka|GHJGDHKK_60); gnlProkkaGHJGDHKK_61 (original name was: gnl|Prokka|GHJGDHKK_61); gnlProkkaGHJGDHKK_62 (original name was: gnl|Prokka|GHJGDHKK_62); gnlProkkaGHJGDHKK_64 (original name was: gnl|Prokka|GHJGDHKK_64); gnlProkkaGHJGDHKK_65 (original name was: gnl|Prokka|GHJGDHKK_65); gnlProkkaGHJGDHKK_66 (original name was: gnl|Prokka|GHJGDHKK_66)

Compact view

gnlProkkaGHJGDHKK_16 - Region 1 - arylpolyene

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Location: 1 - 45,878 nt. (total: 45,878 nt) Show pHMM detection rules used

Region on contig edge.

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg16_33

AMP-binding (18..335): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMIITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

gnlProkkaGHJGDHKK_63 - Region 1 - RRE-containing

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Location: 170,141 - 190,491 nt. (total: 20,351 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.