GCA_028402285.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaLNIIHHEB_48 (original name was: gnl|Prokka|LNIIHHEB_48)

Region	Type	From	To	Most similar known cluster		Similarity
Region 48.1	RRE-containing	1	13,814

gnlProkkaLNIIHHEB_50 (original name was: gnl|Prokka|LNIIHHEB_50)

Region	Type	From	To	Most similar known cluster		Similarity
Region 50.1	arylpolyene	51,350	98,955	flexirubin	Other	48%

Region	Type	From	To	Most similar known cluster	Similarity
Region 48.1	RRE-containing	1	13,814
Region 50.1	arylpolyene	51,350	98,955	flexirubin	Other	48%

No secondary metabolite regions were found in these records:: gnlProkkaLNIIHHEB_1 (original name was: gnl|Prokka|LNIIHHEB_1); gnlProkkaLNIIHHEB_2 (original name was: gnl|Prokka|LNIIHHEB_2); gnlProkkaLNIIHHEB_3 (original name was: gnl|Prokka|LNIIHHEB_3); gnlProkkaLNIIHHEB_4 (original name was: gnl|Prokka|LNIIHHEB_4); gnlProkkaLNIIHHEB_5 (original name was: gnl|Prokka|LNIIHHEB_5); gnlProkkaLNIIHHEB_6 (original name was: gnl|Prokka|LNIIHHEB_6); gnlProkkaLNIIHHEB_7 (original name was: gnl|Prokka|LNIIHHEB_7); gnlProkkaLNIIHHEB_8 (original name was: gnl|Prokka|LNIIHHEB_8); gnlProkkaLNIIHHEB_9 (original name was: gnl|Prokka|LNIIHHEB_9); gnlProkkaLNIIHHEB_10 (original name was: gnl|Prokka|LNIIHHEB_10); gnlProkkaLNIIHHEB_11 (original name was: gnl|Prokka|LNIIHHEB_11); gnlProkkaLNIIHHEB_12 (original name was: gnl|Prokka|LNIIHHEB_12); gnlProkkaLNIIHHEB_13 (original name was: gnl|Prokka|LNIIHHEB_13); gnlProkkaLNIIHHEB_14 (original name was: gnl|Prokka|LNIIHHEB_14); gnlProkkaLNIIHHEB_15 (original name was: gnl|Prokka|LNIIHHEB_15); gnlProkkaLNIIHHEB_16 (original name was: gnl|Prokka|LNIIHHEB_16); gnlProkkaLNIIHHEB_17 (original name was: gnl|Prokka|LNIIHHEB_17); gnlProkkaLNIIHHEB_18 (original name was: gnl|Prokka|LNIIHHEB_18); gnlProkkaLNIIHHEB_19 (original name was: gnl|Prokka|LNIIHHEB_19); gnlProkkaLNIIHHEB_20 (original name was: gnl|Prokka|LNIIHHEB_20); gnlProkkaLNIIHHEB_21 (original name was: gnl|Prokka|LNIIHHEB_21); gnlProkkaLNIIHHEB_22 (original name was: gnl|Prokka|LNIIHHEB_22); gnlProkkaLNIIHHEB_23 (original name was: gnl|Prokka|LNIIHHEB_23); gnlProkkaLNIIHHEB_24 (original name was: gnl|Prokka|LNIIHHEB_24); gnlProkkaLNIIHHEB_25 (original name was: gnl|Prokka|LNIIHHEB_25); gnlProkkaLNIIHHEB_26 (original name was: gnl|Prokka|LNIIHHEB_26); gnlProkkaLNIIHHEB_27 (original name was: gnl|Prokka|LNIIHHEB_27); gnlProkkaLNIIHHEB_28 (original name was: gnl|Prokka|LNIIHHEB_28); gnlProkkaLNIIHHEB_29 (original name was: gnl|Prokka|LNIIHHEB_29); gnlProkkaLNIIHHEB_30 (original name was: gnl|Prokka|LNIIHHEB_30); gnlProkkaLNIIHHEB_31 (original name was: gnl|Prokka|LNIIHHEB_31); gnlProkkaLNIIHHEB_32 (original name was: gnl|Prokka|LNIIHHEB_32); gnlProkkaLNIIHHEB_33 (original name was: gnl|Prokka|LNIIHHEB_33); gnlProkkaLNIIHHEB_34 (original name was: gnl|Prokka|LNIIHHEB_34); gnlProkkaLNIIHHEB_35 (original name was: gnl|Prokka|LNIIHHEB_35); gnlProkkaLNIIHHEB_36 (original name was: gnl|Prokka|LNIIHHEB_36); gnlProkkaLNIIHHEB_37 (original name was: gnl|Prokka|LNIIHHEB_37); gnlProkkaLNIIHHEB_38 (original name was: gnl|Prokka|LNIIHHEB_38); gnlProkkaLNIIHHEB_39 (original name was: gnl|Prokka|LNIIHHEB_39); gnlProkkaLNIIHHEB_40 (original name was: gnl|Prokka|LNIIHHEB_40); gnlProkkaLNIIHHEB_41 (original name was: gnl|Prokka|LNIIHHEB_41); gnlProkkaLNIIHHEB_42 (original name was: gnl|Prokka|LNIIHHEB_42); gnlProkkaLNIIHHEB_43 (original name was: gnl|Prokka|LNIIHHEB_43); gnlProkkaLNIIHHEB_44 (original name was: gnl|Prokka|LNIIHHEB_44); gnlProkkaLNIIHHEB_45 (original name was: gnl|Prokka|LNIIHHEB_45); gnlProkkaLNIIHHEB_46 (original name was: gnl|Prokka|LNIIHHEB_46); gnlProkkaLNIIHHEB_47 (original name was: gnl|Prokka|LNIIHHEB_47); gnlProkkaLNIIHHEB_49 (original name was: gnl|Prokka|LNIIHHEB_49); gnlProkkaLNIIHHEB_51 (original name was: gnl|Prokka|LNIIHHEB_51)

Compact view

gnlProkkaLNIIHHEB_48 - Region 1 - RRE-containing

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Location: 1 - 13,814 nt. (total: 13,814 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLNIIHHEB_50 - Region 1 - arylpolyene

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Location: 51,350 - 98,955 nt. (total: 47,606 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg50_62

AMP-binding (48..308): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMIITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)