GCA_028446625.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaHOMHOIHN_12 (original name was: gnl|Prokka|HOMHOIHN_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	RiPP-like	101,260	113,410

gnlProkkaHOMHOIHN_19 (original name was: gnl|Prokka|HOMHOIHN_19)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	cyclic-lactone-autoinducer	110,709	131,414

gnlProkkaHOMHOIHN_21 (original name was: gnl|Prokka|HOMHOIHN_21)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	T3PKS	78,400	119,569

gnlProkkaHOMHOIHN_23 (original name was: gnl|Prokka|HOMHOIHN_23)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	terpene	77,186	92,846

Region	Type	From	To	Similarity
Region 12.1	RiPP-like	101,260	113,410
Region 16.1	cyclic-lactone-autoinducer	110,709	131,414
Region 18.1	T3PKS	78,400	119,569
Region 20.1	terpene	77,186	92,846

No secondary metabolite regions were found in these records:: gnlProkkaHOMHOIHN_1 (original name was: gnl|Prokka|HOMHOIHN_1); gnlProkkaHOMHOIHN_2 (original name was: gnl|Prokka|HOMHOIHN_2); gnlProkkaHOMHOIHN_3 (original name was: gnl|Prokka|HOMHOIHN_3); gnlProkkaHOMHOIHN_4 (original name was: gnl|Prokka|HOMHOIHN_4); gnlProkkaHOMHOIHN_5 (original name was: gnl|Prokka|HOMHOIHN_5); gnlProkkaHOMHOIHN_6 (original name was: gnl|Prokka|HOMHOIHN_6); gnlProkkaHOMHOIHN_7 (original name was: gnl|Prokka|HOMHOIHN_7); gnlProkkaHOMHOIHN_8 (original name was: gnl|Prokka|HOMHOIHN_8); gnlProkkaHOMHOIHN_9 (original name was: gnl|Prokka|HOMHOIHN_9); gnlProkkaHOMHOIHN_10 (original name was: gnl|Prokka|HOMHOIHN_10); gnlProkkaHOMHOIHN_11 (original name was: gnl|Prokka|HOMHOIHN_11); gnlProkkaHOMHOIHN_13 (original name was: gnl|Prokka|HOMHOIHN_13); gnlProkkaHOMHOIHN_17 (original name was: gnl|Prokka|HOMHOIHN_17); gnlProkkaHOMHOIHN_18 (original name was: gnl|Prokka|HOMHOIHN_18); gnlProkkaHOMHOIHN_20 (original name was: gnl|Prokka|HOMHOIHN_20); gnlProkkaHOMHOIHN_22 (original name was: gnl|Prokka|HOMHOIHN_22)

Compact view

gnlProkkaHOMHOIHN_12 - Region 1 - RiPP-like

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Location: 101,260 - 113,410 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHOMHOIHN_19 - Region 1 - cyclic-lactone-autoinducer

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Location: 110,709 - 131,414 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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core biosynthetic genes

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transport-related genes

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resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHOMHOIHN_21 - Region 1 - T3PKS

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Location: 78,400 - 119,569 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

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resistance

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NRPS/PKS domains

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaHOMHOIHN_23 - Region 1 - terpene

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Location: 77,186 - 92,846 nt. (total: 15,661 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.