GCA_028895585.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaIHOICMCE_1 (original name was: gnl|Prokka|IHOICMCE_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	T3PKS	1	34,164

gnlProkkaIHOICMCE_8 (original name was: gnl|Prokka|IHOICMCE_8)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	RiPP-like	324	12,474

gnlProkkaIHOICMCE_28 (original name was: gnl|Prokka|IHOICMCE_28)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	terpene	95,913	116,794

gnlProkkaIHOICMCE_30 (original name was: gnl|Prokka|IHOICMCE_30)

Region	Type	From	To	Most similar known cluster		Similarity
Region 30.1	cyclic-lactone-autoinducer	886	21,591

gnlProkkaIHOICMCE_41 (original name was: gnl|Prokka|IHOICMCE_41)

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	NRPS,NRPS-like	7,947	63,657

Region	Type	From	To	Similarity
Region 1.1	T3PKS	1	34,164
Region 8.1	RiPP-like	324	12,474
Region 28.1	terpene	95,913	116,794
Region 30.1	cyclic-lactone-autoinducer	886	21,591
Region 41.1	NRPS,NRPS-like	7,947	63,657

No secondary metabolite regions were found in these records:: gnlProkkaIHOICMCE_2 (original name was: gnl|Prokka|IHOICMCE_2); gnlProkkaIHOICMCE_3 (original name was: gnl|Prokka|IHOICMCE_3); gnlProkkaIHOICMCE_4 (original name was: gnl|Prokka|IHOICMCE_4); gnlProkkaIHOICMCE_5 (original name was: gnl|Prokka|IHOICMCE_5); gnlProkkaIHOICMCE_6 (original name was: gnl|Prokka|IHOICMCE_6); gnlProkkaIHOICMCE_7 (original name was: gnl|Prokka|IHOICMCE_7); gnlProkkaIHOICMCE_9 (original name was: gnl|Prokka|IHOICMCE_9); gnlProkkaIHOICMCE_10 (original name was: gnl|Prokka|IHOICMCE_10); gnlProkkaIHOICMCE_11 (original name was: gnl|Prokka|IHOICMCE_11); gnlProkkaIHOICMCE_12 (original name was: gnl|Prokka|IHOICMCE_12); gnlProkkaIHOICMCE_13 (original name was: gnl|Prokka|IHOICMCE_13); gnlProkkaIHOICMCE_14 (original name was: gnl|Prokka|IHOICMCE_14); gnlProkkaIHOICMCE_15 (original name was: gnl|Prokka|IHOICMCE_15); gnlProkkaIHOICMCE_16 (original name was: gnl|Prokka|IHOICMCE_16); gnlProkkaIHOICMCE_17 (original name was: gnl|Prokka|IHOICMCE_17); gnlProkkaIHOICMCE_18 (original name was: gnl|Prokka|IHOICMCE_18); gnlProkkaIHOICMCE_19 (original name was: gnl|Prokka|IHOICMCE_19); gnlProkkaIHOICMCE_20 (original name was: gnl|Prokka|IHOICMCE_20); gnlProkkaIHOICMCE_21 (original name was: gnl|Prokka|IHOICMCE_21); gnlProkkaIHOICMCE_22 (original name was: gnl|Prokka|IHOICMCE_22); gnlProkkaIHOICMCE_23 (original name was: gnl|Prokka|IHOICMCE_23); gnlProkkaIHOICMCE_24 (original name was: gnl|Prokka|IHOICMCE_24); gnlProkkaIHOICMCE_25 (original name was: gnl|Prokka|IHOICMCE_25); gnlProkkaIHOICMCE_26 (original name was: gnl|Prokka|IHOICMCE_26); gnlProkkaIHOICMCE_27 (original name was: gnl|Prokka|IHOICMCE_27); gnlProkkaIHOICMCE_29 (original name was: gnl|Prokka|IHOICMCE_29); gnlProkkaIHOICMCE_31 (original name was: gnl|Prokka|IHOICMCE_31); gnlProkkaIHOICMCE_32 (original name was: gnl|Prokka|IHOICMCE_32); gnlProkkaIHOICMCE_33 (original name was: gnl|Prokka|IHOICMCE_33); gnlProkkaIHOICMCE_34 (original name was: gnl|Prokka|IHOICMCE_34); gnlProkkaIHOICMCE_35 (original name was: gnl|Prokka|IHOICMCE_35); gnlProkkaIHOICMCE_36 (original name was: gnl|Prokka|IHOICMCE_36); gnlProkkaIHOICMCE_37 (original name was: gnl|Prokka|IHOICMCE_37); gnlProkkaIHOICMCE_38 (original name was: gnl|Prokka|IHOICMCE_38); gnlProkkaIHOICMCE_39 (original name was: gnl|Prokka|IHOICMCE_39); gnlProkkaIHOICMCE_40 (original name was: gnl|Prokka|IHOICMCE_40); gnlProkkaIHOICMCE_42 (original name was: gnl|Prokka|IHOICMCE_42); gnlProkkaIHOICMCE_43 (original name was: gnl|Prokka|IHOICMCE_43); gnlProkkaIHOICMCE_44 (original name was: gnl|Prokka|IHOICMCE_44); gnlProkkaIHOICMCE_45 (original name was: gnl|Prokka|IHOICMCE_45); gnlProkkaIHOICMCE_46 (original name was: gnl|Prokka|IHOICMCE_46); gnlProkkaIHOICMCE_47 (original name was: gnl|Prokka|IHOICMCE_47); gnlProkkaIHOICMCE_48 (original name was: gnl|Prokka|IHOICMCE_48); gnlProkkaIHOICMCE_49 (original name was: gnl|Prokka|IHOICMCE_49); gnlProkkaIHOICMCE_50 (original name was: gnl|Prokka|IHOICMCE_50); gnlProkkaIHOICMCE_51 (original name was: gnl|Prokka|IHOICMCE_51); gnlProkkaIHOICMCE_52 (original name was: gnl|Prokka|IHOICMCE_52); gnlProkkaIHOICMCE_53 (original name was: gnl|Prokka|IHOICMCE_53); gnlProkkaIHOICMCE_54 (original name was: gnl|Prokka|IHOICMCE_54); gnlProkkaIHOICMCE_55 (original name was: gnl|Prokka|IHOICMCE_55); gnlProkkaIHOICMCE_56 (original name was: gnl|Prokka|IHOICMCE_56); gnlProkkaIHOICMCE_57 (original name was: gnl|Prokka|IHOICMCE_57); gnlProkkaIHOICMCE_58 (original name was: gnl|Prokka|IHOICMCE_58); gnlProkkaIHOICMCE_59 (original name was: gnl|Prokka|IHOICMCE_59); gnlProkkaIHOICMCE_60 (original name was: gnl|Prokka|IHOICMCE_60); gnlProkkaIHOICMCE_61 (original name was: gnl|Prokka|IHOICMCE_61); gnlProkkaIHOICMCE_62 (original name was: gnl|Prokka|IHOICMCE_62); gnlProkkaIHOICMCE_63 (original name was: gnl|Prokka|IHOICMCE_63); gnlProkkaIHOICMCE_64 (original name was: gnl|Prokka|IHOICMCE_64); gnlProkkaIHOICMCE_65 (original name was: gnl|Prokka|IHOICMCE_65); gnlProkkaIHOICMCE_66 (original name was: gnl|Prokka|IHOICMCE_66); gnlProkkaIHOICMCE_67 (original name was: gnl|Prokka|IHOICMCE_67); gnlProkkaIHOICMCE_68 (original name was: gnl|Prokka|IHOICMCE_68); gnlProkkaIHOICMCE_69 (original name was: gnl|Prokka|IHOICMCE_69); gnlProkkaIHOICMCE_70 (original name was: gnl|Prokka|IHOICMCE_70); gnlProkkaIHOICMCE_71 (original name was: gnl|Prokka|IHOICMCE_71); gnlProkkaIHOICMCE_72 (original name was: gnl|Prokka|IHOICMCE_72); gnlProkkaIHOICMCE_73 (original name was: gnl|Prokka|IHOICMCE_73); gnlProkkaIHOICMCE_74 (original name was: gnl|Prokka|IHOICMCE_74); gnlProkkaIHOICMCE_75 (original name was: gnl|Prokka|IHOICMCE_75); gnlProkkaIHOICMCE_76 (original name was: gnl|Prokka|IHOICMCE_76); gnlProkkaIHOICMCE_77 (original name was: gnl|Prokka|IHOICMCE_77); gnlProkkaIHOICMCE_78 (original name was: gnl|Prokka|IHOICMCE_78); gnlProkkaIHOICMCE_79 (original name was: gnl|Prokka|IHOICMCE_79); gnlProkkaIHOICMCE_80 (original name was: gnl|Prokka|IHOICMCE_80); gnlProkkaIHOICMCE_81 (original name was: gnl|Prokka|IHOICMCE_81)

Compact view

gnlProkkaIHOICMCE_1 - Region 1 - T3PKS

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Location: 1 - 34,164 nt. (total: 34,164 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaIHOICMCE_8 - Region 1 - RiPP-like

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Location: 324 - 12,474 nt. (total: 12,151 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaIHOICMCE_28 - Region 1 - terpene

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Location: 95,913 - 116,794 nt. (total: 20,882 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaIHOICMCE_30 - Region 1 - cyclic-lactone-autoinducer

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Location: 886 - 21,591 nt. (total: 20,706 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaIHOICMCE_41 - Region 1 - NRPS,NRPS-like

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Location: 7,947 - 63,657 nt. (total: 55,711 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 7946 - 63657:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - Ala - D-Ser - Gly) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 25212 - 63657:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X - Ala - D-Ser - Gly) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg41_25

Search NORINE for peptide: strict or relaxed

AMP-binding (8..381): X

nrpys: Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: SVTQAAVAGK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

AMP-binding (1000..1372): X

nrpys: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DSHGYGCVLK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

AMP-binding (1967..2333): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVLIVAAVIK
Nearest Stachelhaus code(s):: Ala DVWVVAAVIK (68% 8Å match); S-bohPhe or Phe DALIVAAVCK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

AMP-binding (2921..3307): Ser

nrpys: Ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
Small clusters prediction:: ser (Ser)
Single AA prediction:: ser (Ser)

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLIDK
Nearest Stachelhaus code(s):: Ser DVWHFSLIDK (94% 8Å match)
Stachelhaus code match:: 100% (strong)

AMP-binding (4327..4705): Gly

nrpys: Gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: gly (Gly)

Stachelhaus prediction details:

Stachelhaus sequence:: DITQMGIVWK
Nearest Stachelhaus code(s):: Gly DILQMGMVWK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)

ctg41_28

AMP-binding (13..374): X

nrpys: Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: VVYNTAVCAK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)