GCA_029767725.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaLFDEFCAG_1 (original name was: gnl|Prokka|LFDEFCAG_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	NRPS	1	4,550

gnlProkkaLFDEFCAG_20 (original name was: gnl|Prokka|LFDEFCAG_20)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	terpene	96,846	117,727

gnlProkkaLFDEFCAG_25 (original name was: gnl|Prokka|LFDEFCAG_25)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	RiPP-like	15,747	27,897	salivaricin CRL1328 α peptide/salivaricin CRL1328 β peptide	RiPP	16%

gnlProkkaLFDEFCAG_78 (original name was: gnl|Prokka|LFDEFCAG_78)

Region	Type	From	To	Most similar known cluster		Similarity
Region 73.1	T3PKS	43,159	71,586

gnlProkkaLFDEFCAG_89 (original name was: gnl|Prokka|LFDEFCAG_89)

Region	Type	From	To	Most similar known cluster		Similarity
Region 81.1	cyclic-lactone-autoinducer	8,902	29,613

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	NRPS	1	4,550
Region 20.1	terpene	96,846	117,727
Region 25.1	RiPP-like	15,747	27,897	salivaricin CRL1328 α peptide/salivaricin CRL1328 β peptide	RiPP	16%
Region 73.1	T3PKS	43,159	71,586
Region 81.1	cyclic-lactone-autoinducer	8,902	29,613

Compact view

gnlProkkaLFDEFCAG_1 - Region 1 - NRPS

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Location: 1 - 4,550 nt. (total: 4,550 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 4550:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg1_1

Search NORINE for peptide: strict or relaxed

AMP-binding (260..638): Gly

nrpys: Gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: gly (Gly)

Stachelhaus prediction details:

Stachelhaus sequence:: DITQMGIVWK
Nearest Stachelhaus code(s):: Gly DILQMGMVWK (62% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaLFDEFCAG_20 - Region 1 - terpene

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Location: 96,846 - 117,727 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLFDEFCAG_25 - Region 1 - RiPP-like

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Location: 15,747 - 27,897 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaLFDEFCAG_78 - Region 1 - T3PKS

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Location: 43,159 - 71,586 nt. (total: 28,428 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLFDEFCAG_89 - Region 1 - cyclic-lactone-autoinducer

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Location: 8,902 - 29,613 nt. (total: 20,712 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.