GCA_029872635.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaFOEBKJKK_2 (original name was: gnl|Prokka|FOEBKJKK_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RRE-containing	12,297	32,650	polysaccharide C	Saccharide	16%

gnlProkkaFOEBKJKK_13 (original name was: gnl|Prokka|FOEBKJKK_13)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	phosphonate	4,724	18,283	polysaccharide B	Saccharide	13%

gnlProkkaFOEBKJKK_45 (original name was: gnl|Prokka|FOEBKJKK_45)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	lanthipeptide-class-i	40,409	64,285

gnlProkkaFOEBKJKK_105 (original name was: gnl|Prokka|FOEBKJKK_105)

Region	Type	From	To	Most similar known cluster		Similarity
Region 74.1	NRPS-like	71,024	113,453

gnlProkkaFOEBKJKK_116 (original name was: gnl|Prokka|FOEBKJKK_116)

Region	Type	From	To	Most similar known cluster		Similarity
Region 75.1	phosphonate	106,133	120,412	polysaccharide B	Saccharide	30%

No secondary metabolite regions were found in these records:: gnlProkkaFOEBKJKK_1 (original name was: gnl|Prokka|FOEBKJKK_1); gnlProkkaFOEBKJKK_24 (original name was: gnl|Prokka|FOEBKJKK_24); gnlProkkaFOEBKJKK_32 (original name was: gnl|Prokka|FOEBKJKK_32); gnlProkkaFOEBKJKK_33 (original name was: gnl|Prokka|FOEBKJKK_33); gnlProkkaFOEBKJKK_34 (original name was: gnl|Prokka|FOEBKJKK_34); gnlProkkaFOEBKJKK_35 (original name was: gnl|Prokka|FOEBKJKK_35); gnlProkkaFOEBKJKK_36 (original name was: gnl|Prokka|FOEBKJKK_36); gnlProkkaFOEBKJKK_37 (original name was: gnl|Prokka|FOEBKJKK_37); gnlProkkaFOEBKJKK_38 (original name was: gnl|Prokka|FOEBKJKK_38); gnlProkkaFOEBKJKK_39 (original name was: gnl|Prokka|FOEBKJKK_39); gnlProkkaFOEBKJKK_40 (original name was: gnl|Prokka|FOEBKJKK_40); gnlProkkaFOEBKJKK_41 (original name was: gnl|Prokka|FOEBKJKK_41); gnlProkkaFOEBKJKK_42 (original name was: gnl|Prokka|FOEBKJKK_42); gnlProkkaFOEBKJKK_43 (original name was: gnl|Prokka|FOEBKJKK_43); gnlProkkaFOEBKJKK_44 (original name was: gnl|Prokka|FOEBKJKK_44); gnlProkkaFOEBKJKK_46 (original name was: gnl|Prokka|FOEBKJKK_46); gnlProkkaFOEBKJKK_47 (original name was: gnl|Prokka|FOEBKJKK_47); gnlProkkaFOEBKJKK_48 (original name was: gnl|Prokka|FOEBKJKK_48); gnlProkkaFOEBKJKK_49 (original name was: gnl|Prokka|FOEBKJKK_49); gnlProkkaFOEBKJKK_50 (original name was: gnl|Prokka|FOEBKJKK_50); gnlProkkaFOEBKJKK_51 (original name was: gnl|Prokka|FOEBKJKK_51); gnlProkkaFOEBKJKK_52 (original name was: gnl|Prokka|FOEBKJKK_52); gnlProkkaFOEBKJKK_53 (original name was: gnl|Prokka|FOEBKJKK_53); gnlProkkaFOEBKJKK_54 (original name was: gnl|Prokka|FOEBKJKK_54); gnlProkkaFOEBKJKK_55 (original name was: gnl|Prokka|FOEBKJKK_55); gnlProkkaFOEBKJKK_56 (original name was: gnl|Prokka|FOEBKJKK_56); gnlProkkaFOEBKJKK_57 (original name was: gnl|Prokka|FOEBKJKK_57); gnlProkkaFOEBKJKK_58 (original name was: gnl|Prokka|FOEBKJKK_58); gnlProkkaFOEBKJKK_59 (original name was: gnl|Prokka|FOEBKJKK_59); gnlProkkaFOEBKJKK_60 (original name was: gnl|Prokka|FOEBKJKK_60); gnlProkkaFOEBKJKK_61 (original name was: gnl|Prokka|FOEBKJKK_61); gnlProkkaFOEBKJKK_62 (original name was: gnl|Prokka|FOEBKJKK_62); gnlProkkaFOEBKJKK_63 (original name was: gnl|Prokka|FOEBKJKK_63); gnlProkkaFOEBKJKK_64 (original name was: gnl|Prokka|FOEBKJKK_64); gnlProkkaFOEBKJKK_65 (original name was: gnl|Prokka|FOEBKJKK_65); gnlProkkaFOEBKJKK_66 (original name was: gnl|Prokka|FOEBKJKK_66); gnlProkkaFOEBKJKK_67 (original name was: gnl|Prokka|FOEBKJKK_67); gnlProkkaFOEBKJKK_68 (original name was: gnl|Prokka|FOEBKJKK_68); gnlProkkaFOEBKJKK_69 (original name was: gnl|Prokka|FOEBKJKK_69); gnlProkkaFOEBKJKK_70 (original name was: gnl|Prokka|FOEBKJKK_70); gnlProkkaFOEBKJKK_71 (original name was: gnl|Prokka|FOEBKJKK_71); gnlProkkaFOEBKJKK_72 (original name was: gnl|Prokka|FOEBKJKK_72); gnlProkkaFOEBKJKK_73 (original name was: gnl|Prokka|FOEBKJKK_73); gnlProkkaFOEBKJKK_74 (original name was: gnl|Prokka|FOEBKJKK_74); gnlProkkaFOEBKJKK_75 (original name was: gnl|Prokka|FOEBKJKK_75); gnlProkkaFOEBKJKK_76 (original name was: gnl|Prokka|FOEBKJKK_76); gnlProkkaFOEBKJKK_77 (original name was: gnl|Prokka|FOEBKJKK_77); gnlProkkaFOEBKJKK_78 (original name was: gnl|Prokka|FOEBKJKK_78); gnlProkkaFOEBKJKK_79 (original name was: gnl|Prokka|FOEBKJKK_79); gnlProkkaFOEBKJKK_80 (original name was: gnl|Prokka|FOEBKJKK_80); gnlProkkaFOEBKJKK_81 (original name was: gnl|Prokka|FOEBKJKK_81); gnlProkkaFOEBKJKK_82 (original name was: gnl|Prokka|FOEBKJKK_82); gnlProkkaFOEBKJKK_83 (original name was: gnl|Prokka|FOEBKJKK_83); gnlProkkaFOEBKJKK_84 (original name was: gnl|Prokka|FOEBKJKK_84); gnlProkkaFOEBKJKK_85 (original name was: gnl|Prokka|FOEBKJKK_85); gnlProkkaFOEBKJKK_86 (original name was: gnl|Prokka|FOEBKJKK_86); gnlProkkaFOEBKJKK_87 (original name was: gnl|Prokka|FOEBKJKK_87); gnlProkkaFOEBKJKK_88 (original name was: gnl|Prokka|FOEBKJKK_88); gnlProkkaFOEBKJKK_89 (original name was: gnl|Prokka|FOEBKJKK_89); gnlProkkaFOEBKJKK_90 (original name was: gnl|Prokka|FOEBKJKK_90); gnlProkkaFOEBKJKK_91 (original name was: gnl|Prokka|FOEBKJKK_91); gnlProkkaFOEBKJKK_92 (original name was: gnl|Prokka|FOEBKJKK_92); gnlProkkaFOEBKJKK_93 (original name was: gnl|Prokka|FOEBKJKK_93); gnlProkkaFOEBKJKK_94 (original name was: gnl|Prokka|FOEBKJKK_94); gnlProkkaFOEBKJKK_95 (original name was: gnl|Prokka|FOEBKJKK_95); gnlProkkaFOEBKJKK_96 (original name was: gnl|Prokka|FOEBKJKK_96); gnlProkkaFOEBKJKK_97 (original name was: gnl|Prokka|FOEBKJKK_97); gnlProkkaFOEBKJKK_98 (original name was: gnl|Prokka|FOEBKJKK_98); gnlProkkaFOEBKJKK_99 (original name was: gnl|Prokka|FOEBKJKK_99); gnlProkkaFOEBKJKK_100 (original name was: gnl|Prokka|FOEBKJKK_100)

Compact view

gnlProkkaFOEBKJKK_2 - Region 1 - RRE-containing

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Location: 12,297 - 32,650 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaFOEBKJKK_13 - Region 1 - phosphonate

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Location: 4,724 - 18,283 nt. (total: 13,560 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaFOEBKJKK_45 - Region 1 - lanthipeptide-class-i

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Location: 40,409 - 64,285 nt. (total: 23,877 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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KnownClusterBlast

Lanthipeptides

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaFOEBKJKK_105 - Region 1 - NRPS-like

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Location: 71,024 - 113,453 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 71023 - 113453:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg74_93

AMP-binding (12..401): X

nrpys: Ile, Leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaFOEBKJKK_116 - Region 1 - phosphonate

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Location: 106,133 - 120,412 nt. (total: 14,280 nt) Show pHMM detection rules used

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1