GCA_029872775.1 - 9 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	NADH_dehydrogenase_I	E-MGC	32,262	62,198	NADH dehydrogenase I Bacteroides sp.	NADHD	100%

c00016_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_68)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Fumarate2succinate	SCFA	9,600	33,058	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00018_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_73)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Rnf_complex	E-MGC	17,599	42,699	Rnf complex C. sporogenes	RNF	83%

c00020_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_75)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	TPP_AA_metabolism	Putative	175,213	201,814

c00031_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_86)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 31.1	PFOR_II_pathway	SCFA	4,680	28,234	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 31.2	succinate2propionate	SCFA	67,808	92,446	Succinate to propionate B. theta	PRO	66%

c00064_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_119)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 64.1	Pyruvate2acetate-formate	SCFA	44,373	69,136	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%
Region 64.2	TPP_fatty_acids	Putative	71,828	97,703

c00086_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_141)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 86.1	porA	SCFA	98,255	121,179	porA C. sporogenes	POR	80%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_1); c00003_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_3); c00004_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_4); c00005_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_5); c00006_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_6); c00007_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_7); c00008_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_8); c00009_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_9); c00010_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_10); c00011_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_13); c00012_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_24); c00013_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_35); c00014_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_46); c00015_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_57); c00017_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_72); c00019_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_74); c00021_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_76); c00022_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_77); c00023_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_78); c00024_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_79); c00025_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_80); c00026_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_81); c00027_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_82); c00028_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_83); c00029_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_84); c00030_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_85); c00032_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_87); c00033_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_88); c00034_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_89); c00035_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_90); c00036_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_91); c00037_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_92); c00038_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_93); c00039_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_94); c00040_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_95); c00041_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_96); c00042_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_97); c00043_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_98); c00044_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_99); c00045_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_100); c00046_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_101); c00047_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_102); c00048_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_103); c00049_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_104); c00050_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_105); c00051_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_106); c00052_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_107); c00053_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_108); c00054_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_109); c00055_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_110); c00056_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_111); c00057_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_112); c00058_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_113); c00059_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_114); c00060_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_115); c00061_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_116); c00062_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_117); c00063_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_118); c00065_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_120); c00066_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_121); c00067_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_122); c00068_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_123); c00069_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_124); c00070_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_125); c00071_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_126); c00072_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_127); c00073_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_128); c00074_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_129); c00075_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_130); c00076_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_131); c00077_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_132); c00078_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_133); c00079_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_134); c00080_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_135); c00081_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_136); c00082_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_137); c00083_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_138); c00084_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_139); c00085_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_140); c00087_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_142); c00088_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_143); c00089_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_144); c00090_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_145); c00091_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_146); c00092_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_147); c00093_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_148); c00094_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_149); c00095_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_150); c00096_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_151); c00097_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_152); c00098_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_153); c00099_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_154); c00100_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_155); c00101_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_156); c00102_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_157); c00103_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_158); c00104_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_159); c00105_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_160); c00106_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_161); c00107_gnlPro.. (original name was: gnl|Prokka|EMNKJMLN_162)

Compact view

c00002_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 32,262 - 62,198 nt. (total: 29,937 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

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transport-related genes

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c00016_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 9,600 - 33,058 nt. (total: 23,459 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00018_gnlPro.. - Region 1 - Rnf_complex

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Location: 17,599 - 42,699 nt. (total: 25,101 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00020_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 175,213 - 201,814 nt. (total: 26,602 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00031_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 4,680 - 28,234 nt. (total: 23,555 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00031_gnlPro.. - Region 2 - succinate2propionate

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Location: 67,808 - 92,446 nt. (total: 24,639 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00064_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 44,373 - 69,136 nt. (total: 24,764 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00064_gnlPro.. - Region 2 - TPP_fatty_acids

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Location: 71,828 - 97,703 nt. (total: 25,876 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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c00086_gnlPro.. - Region 1 - porA

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Location: 98,255 - 121,179 nt. (total: 22,925 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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