GCA_029872965.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaDDABIKPB_2 (original name was: gnl|Prokka|DDABIKPB_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	phosphonate	66,946	84,730	polysaccharide B	Saccharide	33%

gnlProkkaDDABIKPB_11 (original name was: gnl|Prokka|DDABIKPB_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	NRPS-like	29,700	72,129

gnlProkkaDDABIKPB_56 (original name was: gnl|Prokka|DDABIKPB_56)

Region	Type	From	To	Most similar known cluster		Similarity
Region 56.1	RRE-containing	156,797	177,150	polysaccharide C	Saccharide	16%

No secondary metabolite regions were found in these records:: gnlProkkaDDABIKPB_1 (original name was: gnl|Prokka|DDABIKPB_1); gnlProkkaDDABIKPB_3 (original name was: gnl|Prokka|DDABIKPB_3); gnlProkkaDDABIKPB_4 (original name was: gnl|Prokka|DDABIKPB_4); gnlProkkaDDABIKPB_5 (original name was: gnl|Prokka|DDABIKPB_5); gnlProkkaDDABIKPB_6 (original name was: gnl|Prokka|DDABIKPB_6); gnlProkkaDDABIKPB_7 (original name was: gnl|Prokka|DDABIKPB_7); gnlProkkaDDABIKPB_8 (original name was: gnl|Prokka|DDABIKPB_8); gnlProkkaDDABIKPB_9 (original name was: gnl|Prokka|DDABIKPB_9); gnlProkkaDDABIKPB_10 (original name was: gnl|Prokka|DDABIKPB_10); gnlProkkaDDABIKPB_12 (original name was: gnl|Prokka|DDABIKPB_12); gnlProkkaDDABIKPB_13 (original name was: gnl|Prokka|DDABIKPB_13); gnlProkkaDDABIKPB_14 (original name was: gnl|Prokka|DDABIKPB_14); gnlProkkaDDABIKPB_15 (original name was: gnl|Prokka|DDABIKPB_15); gnlProkkaDDABIKPB_16 (original name was: gnl|Prokka|DDABIKPB_16); gnlProkkaDDABIKPB_17 (original name was: gnl|Prokka|DDABIKPB_17); gnlProkkaDDABIKPB_18 (original name was: gnl|Prokka|DDABIKPB_18); gnlProkkaDDABIKPB_19 (original name was: gnl|Prokka|DDABIKPB_19); gnlProkkaDDABIKPB_20 (original name was: gnl|Prokka|DDABIKPB_20); gnlProkkaDDABIKPB_21 (original name was: gnl|Prokka|DDABIKPB_21); gnlProkkaDDABIKPB_22 (original name was: gnl|Prokka|DDABIKPB_22); gnlProkkaDDABIKPB_23 (original name was: gnl|Prokka|DDABIKPB_23); gnlProkkaDDABIKPB_24 (original name was: gnl|Prokka|DDABIKPB_24); gnlProkkaDDABIKPB_25 (original name was: gnl|Prokka|DDABIKPB_25); gnlProkkaDDABIKPB_26 (original name was: gnl|Prokka|DDABIKPB_26); gnlProkkaDDABIKPB_27 (original name was: gnl|Prokka|DDABIKPB_27); gnlProkkaDDABIKPB_28 (original name was: gnl|Prokka|DDABIKPB_28); gnlProkkaDDABIKPB_29 (original name was: gnl|Prokka|DDABIKPB_29); gnlProkkaDDABIKPB_30 (original name was: gnl|Prokka|DDABIKPB_30); gnlProkkaDDABIKPB_31 (original name was: gnl|Prokka|DDABIKPB_31); gnlProkkaDDABIKPB_32 (original name was: gnl|Prokka|DDABIKPB_32); gnlProkkaDDABIKPB_33 (original name was: gnl|Prokka|DDABIKPB_33); gnlProkkaDDABIKPB_34 (original name was: gnl|Prokka|DDABIKPB_34); gnlProkkaDDABIKPB_35 (original name was: gnl|Prokka|DDABIKPB_35); gnlProkkaDDABIKPB_36 (original name was: gnl|Prokka|DDABIKPB_36); gnlProkkaDDABIKPB_37 (original name was: gnl|Prokka|DDABIKPB_37); gnlProkkaDDABIKPB_38 (original name was: gnl|Prokka|DDABIKPB_38); gnlProkkaDDABIKPB_39 (original name was: gnl|Prokka|DDABIKPB_39); gnlProkkaDDABIKPB_40 (original name was: gnl|Prokka|DDABIKPB_40); gnlProkkaDDABIKPB_41 (original name was: gnl|Prokka|DDABIKPB_41); gnlProkkaDDABIKPB_42 (original name was: gnl|Prokka|DDABIKPB_42); gnlProkkaDDABIKPB_43 (original name was: gnl|Prokka|DDABIKPB_43); gnlProkkaDDABIKPB_44 (original name was: gnl|Prokka|DDABIKPB_44); gnlProkkaDDABIKPB_45 (original name was: gnl|Prokka|DDABIKPB_45); gnlProkkaDDABIKPB_46 (original name was: gnl|Prokka|DDABIKPB_46); gnlProkkaDDABIKPB_47 (original name was: gnl|Prokka|DDABIKPB_47); gnlProkkaDDABIKPB_48 (original name was: gnl|Prokka|DDABIKPB_48); gnlProkkaDDABIKPB_49 (original name was: gnl|Prokka|DDABIKPB_49); gnlProkkaDDABIKPB_50 (original name was: gnl|Prokka|DDABIKPB_50); gnlProkkaDDABIKPB_51 (original name was: gnl|Prokka|DDABIKPB_51); gnlProkkaDDABIKPB_52 (original name was: gnl|Prokka|DDABIKPB_52); gnlProkkaDDABIKPB_53 (original name was: gnl|Prokka|DDABIKPB_53); gnlProkkaDDABIKPB_54 (original name was: gnl|Prokka|DDABIKPB_54); gnlProkkaDDABIKPB_55 (original name was: gnl|Prokka|DDABIKPB_55); gnlProkkaDDABIKPB_57 (original name was: gnl|Prokka|DDABIKPB_57); gnlProkkaDDABIKPB_58 (original name was: gnl|Prokka|DDABIKPB_58); gnlProkkaDDABIKPB_59 (original name was: gnl|Prokka|DDABIKPB_59); gnlProkkaDDABIKPB_60 (original name was: gnl|Prokka|DDABIKPB_60); gnlProkkaDDABIKPB_61 (original name was: gnl|Prokka|DDABIKPB_61); gnlProkkaDDABIKPB_62 (original name was: gnl|Prokka|DDABIKPB_62); gnlProkkaDDABIKPB_63 (original name was: gnl|Prokka|DDABIKPB_63); gnlProkkaDDABIKPB_64 (original name was: gnl|Prokka|DDABIKPB_64); gnlProkkaDDABIKPB_65 (original name was: gnl|Prokka|DDABIKPB_65); gnlProkkaDDABIKPB_66 (original name was: gnl|Prokka|DDABIKPB_66); gnlProkkaDDABIKPB_67 (original name was: gnl|Prokka|DDABIKPB_67); gnlProkkaDDABIKPB_78 (original name was: gnl|Prokka|DDABIKPB_78); gnlProkkaDDABIKPB_89 (original name was: gnl|Prokka|DDABIKPB_89)

Compact view

gnlProkkaDDABIKPB_2 - Region 1 - phosphonate

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Location: 66,946 - 84,730 nt. (total: 17,785 nt) Show pHMM detection rules used

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

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core biosynthetic genes

additional biosynthetic genes

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regulatory genes

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaDDABIKPB_11 - Region 1 - NRPS-like

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Location: 29,700 - 72,129 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 29699 - 72129:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg11_44

AMP-binding (12..401): X

nrpys: Ile, Leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaDDABIKPB_56 - Region 1 - RRE-containing

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Location: 156,797 - 177,150 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1