GCA_034121045.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJMKPCMNG_4 (original name was: gnl|Prokka|JMKPCMNG_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RRE-containing	1	16,046

gnlProkkaJMKPCMNG_13 (original name was: gnl|Prokka|JMKPCMNG_13)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	arylpolyene	446,975	494,486	flexirubin	Other	48%
Region 13.2	RiPP-like	672,299	680,989

Region	Type	From	To	Most similar known cluster	Similarity
Region 4.1	RRE-containing	1	16,046
Region 13.1	arylpolyene	446,975	494,486	flexirubin	Other	48%
Region 13.2	RiPP-like	672,299	680,989

No secondary metabolite regions were found in these records:: gnlProkkaJMKPCMNG_1 (original name was: gnl|Prokka|JMKPCMNG_1); gnlProkkaJMKPCMNG_2 (original name was: gnl|Prokka|JMKPCMNG_2); gnlProkkaJMKPCMNG_3 (original name was: gnl|Prokka|JMKPCMNG_3); gnlProkkaJMKPCMNG_5 (original name was: gnl|Prokka|JMKPCMNG_5); gnlProkkaJMKPCMNG_6 (original name was: gnl|Prokka|JMKPCMNG_6); gnlProkkaJMKPCMNG_7 (original name was: gnl|Prokka|JMKPCMNG_7); gnlProkkaJMKPCMNG_8 (original name was: gnl|Prokka|JMKPCMNG_8); gnlProkkaJMKPCMNG_9 (original name was: gnl|Prokka|JMKPCMNG_9); gnlProkkaJMKPCMNG_10 (original name was: gnl|Prokka|JMKPCMNG_10); gnlProkkaJMKPCMNG_11 (original name was: gnl|Prokka|JMKPCMNG_11); gnlProkkaJMKPCMNG_12 (original name was: gnl|Prokka|JMKPCMNG_12); gnlProkkaJMKPCMNG_14 (original name was: gnl|Prokka|JMKPCMNG_14); gnlProkkaJMKPCMNG_15 (original name was: gnl|Prokka|JMKPCMNG_15); gnlProkkaJMKPCMNG_16 (original name was: gnl|Prokka|JMKPCMNG_16); gnlProkkaJMKPCMNG_17 (original name was: gnl|Prokka|JMKPCMNG_17); gnlProkkaJMKPCMNG_18 (original name was: gnl|Prokka|JMKPCMNG_18); gnlProkkaJMKPCMNG_19 (original name was: gnl|Prokka|JMKPCMNG_19); gnlProkkaJMKPCMNG_20 (original name was: gnl|Prokka|JMKPCMNG_20); gnlProkkaJMKPCMNG_21 (original name was: gnl|Prokka|JMKPCMNG_21); gnlProkkaJMKPCMNG_22 (original name was: gnl|Prokka|JMKPCMNG_22); gnlProkkaJMKPCMNG_23 (original name was: gnl|Prokka|JMKPCMNG_23); gnlProkkaJMKPCMNG_24 (original name was: gnl|Prokka|JMKPCMNG_24); gnlProkkaJMKPCMNG_25 (original name was: gnl|Prokka|JMKPCMNG_25); gnlProkkaJMKPCMNG_26 (original name was: gnl|Prokka|JMKPCMNG_26); gnlProkkaJMKPCMNG_27 (original name was: gnl|Prokka|JMKPCMNG_27); gnlProkkaJMKPCMNG_28 (original name was: gnl|Prokka|JMKPCMNG_28); gnlProkkaJMKPCMNG_29 (original name was: gnl|Prokka|JMKPCMNG_29); gnlProkkaJMKPCMNG_30 (original name was: gnl|Prokka|JMKPCMNG_30); gnlProkkaJMKPCMNG_31 (original name was: gnl|Prokka|JMKPCMNG_31); gnlProkkaJMKPCMNG_32 (original name was: gnl|Prokka|JMKPCMNG_32); gnlProkkaJMKPCMNG_33 (original name was: gnl|Prokka|JMKPCMNG_33); gnlProkkaJMKPCMNG_34 (original name was: gnl|Prokka|JMKPCMNG_34); gnlProkkaJMKPCMNG_35 (original name was: gnl|Prokka|JMKPCMNG_35); gnlProkkaJMKPCMNG_36 (original name was: gnl|Prokka|JMKPCMNG_36)

Compact view

gnlProkkaJMKPCMNG_4 - Region 1 - RRE-containing

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Location: 1 - 16,046 nt. (total: 16,046 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJMKPCMNG_13 - Region 1 - arylpolyene

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Location: 446,975 - 494,486 nt. (total: 47,512 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

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core biosynthetic genes

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NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg13_349

AMP-binding (55..293): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMVITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

gnlProkkaJMKPCMNG_13 - Region 2 - RiPP-like

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Location: 672,299 - 680,989 nt. (total: 8,691 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.