GCA_034123765.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGHNEEPKB_7 (original name was: gnl|Prokka|GHNEEPKB_7)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	RRE-containing	157,428	177,781	polysaccharide C	Saccharide	20%

gnlProkkaGHNEEPKB_23 (original name was: gnl|Prokka|GHNEEPKB_23)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	phosphonate	631,275	645,554	polysaccharide B	Saccharide	30%

gnlProkkaGHNEEPKB_25 (original name was: gnl|Prokka|GHNEEPKB_25)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	NRPS-like	66,471	108,900

No secondary metabolite regions were found in these records:: gnlProkkaGHNEEPKB_1 (original name was: gnl|Prokka|GHNEEPKB_1); gnlProkkaGHNEEPKB_2 (original name was: gnl|Prokka|GHNEEPKB_2); gnlProkkaGHNEEPKB_3 (original name was: gnl|Prokka|GHNEEPKB_3); gnlProkkaGHNEEPKB_4 (original name was: gnl|Prokka|GHNEEPKB_4); gnlProkkaGHNEEPKB_5 (original name was: gnl|Prokka|GHNEEPKB_5); gnlProkkaGHNEEPKB_6 (original name was: gnl|Prokka|GHNEEPKB_6); gnlProkkaGHNEEPKB_8 (original name was: gnl|Prokka|GHNEEPKB_8); gnlProkkaGHNEEPKB_9 (original name was: gnl|Prokka|GHNEEPKB_9); gnlProkkaGHNEEPKB_10 (original name was: gnl|Prokka|GHNEEPKB_10); gnlProkkaGHNEEPKB_11 (original name was: gnl|Prokka|GHNEEPKB_11); gnlProkkaGHNEEPKB_12 (original name was: gnl|Prokka|GHNEEPKB_12); gnlProkkaGHNEEPKB_13 (original name was: gnl|Prokka|GHNEEPKB_13); gnlProkkaGHNEEPKB_14 (original name was: gnl|Prokka|GHNEEPKB_14); gnlProkkaGHNEEPKB_15 (original name was: gnl|Prokka|GHNEEPKB_15); gnlProkkaGHNEEPKB_16 (original name was: gnl|Prokka|GHNEEPKB_16); gnlProkkaGHNEEPKB_17 (original name was: gnl|Prokka|GHNEEPKB_17); gnlProkkaGHNEEPKB_18 (original name was: gnl|Prokka|GHNEEPKB_18); gnlProkkaGHNEEPKB_19 (original name was: gnl|Prokka|GHNEEPKB_19); gnlProkkaGHNEEPKB_20 (original name was: gnl|Prokka|GHNEEPKB_20); gnlProkkaGHNEEPKB_21 (original name was: gnl|Prokka|GHNEEPKB_21); gnlProkkaGHNEEPKB_22 (original name was: gnl|Prokka|GHNEEPKB_22); gnlProkkaGHNEEPKB_24 (original name was: gnl|Prokka|GHNEEPKB_24); gnlProkkaGHNEEPKB_26 (original name was: gnl|Prokka|GHNEEPKB_26); gnlProkkaGHNEEPKB_27 (original name was: gnl|Prokka|GHNEEPKB_27); gnlProkkaGHNEEPKB_28 (original name was: gnl|Prokka|GHNEEPKB_28); gnlProkkaGHNEEPKB_29 (original name was: gnl|Prokka|GHNEEPKB_29); gnlProkkaGHNEEPKB_30 (original name was: gnl|Prokka|GHNEEPKB_30); gnlProkkaGHNEEPKB_31 (original name was: gnl|Prokka|GHNEEPKB_31); gnlProkkaGHNEEPKB_32 (original name was: gnl|Prokka|GHNEEPKB_32); gnlProkkaGHNEEPKB_33 (original name was: gnl|Prokka|GHNEEPKB_33); gnlProkkaGHNEEPKB_34 (original name was: gnl|Prokka|GHNEEPKB_34); gnlProkkaGHNEEPKB_35 (original name was: gnl|Prokka|GHNEEPKB_35); gnlProkkaGHNEEPKB_36 (original name was: gnl|Prokka|GHNEEPKB_36); gnlProkkaGHNEEPKB_37 (original name was: gnl|Prokka|GHNEEPKB_37); gnlProkkaGHNEEPKB_38 (original name was: gnl|Prokka|GHNEEPKB_38); gnlProkkaGHNEEPKB_39 (original name was: gnl|Prokka|GHNEEPKB_39)

Compact view

gnlProkkaGHNEEPKB_7 - Region 1 - RRE-containing

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Location: 157,428 - 177,781 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaGHNEEPKB_23 - Region 1 - phosphonate

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Location: 631,275 - 645,554 nt. (total: 14,280 nt) Show pHMM detection rules used

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaGHNEEPKB_25 - Region 1 - NRPS-like

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Location: 66,471 - 108,900 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 66470 - 108900:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg25_85

AMP-binding (12..401): X

nrpys: Leu, Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)