GCA_034126095.1 - 8 region(s)

Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Pyruvate2acetate-formate	SCFA	37,350	60,325	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00012_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Fumarate2succinate	SCFA	68,034	91,504	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00021_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_21)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	TPP_AA_metabolism	Putative	1	25,269

c00025_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_25)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	porA	SCFA	21,840	44,675	porA C. sporogenes	POR	60%

c00027_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_27)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	TPP_fatty_acids	Putative	117,109	141,966

c00032_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_32)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 32.1	succinate2propionate	SCFA	21,065	45,593	Succinate to propionate B. theta	PRO	50%

c00053_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_53)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 53.1	Rnf_complex	E-MGC	1	17,969	Rnf complex C. sporogenes	RNF	66%

c00087_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_87)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 87.1	OD_unknown	Putative	15,240	38,403

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_1); c00002_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_2); c00003_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_3); c00005_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_5); c00006_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_6); c00007_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_7); c00008_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_8); c00009_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_9); c00010_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_10); c00011_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_11); c00013_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_13); c00014_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_14); c00015_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_15); c00016_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_16); c00017_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_17); c00018_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_18); c00019_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_19); c00020_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_20); c00022_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_22); c00023_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_23); c00024_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_24); c00026_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_26); c00028_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_28); c00029_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_29); c00030_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_30); c00031_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_31); c00033_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_33); c00034_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_34); c00035_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_35); c00036_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_36); c00037_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_37); c00038_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_38); c00039_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_39); c00040_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_40); c00041_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_41); c00042_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_42); c00043_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_43); c00044_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_44); c00045_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_45); c00046_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_46); c00047_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_47); c00048_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_48); c00049_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_49); c00050_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_50); c00051_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_51); c00052_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_52); c00054_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_54); c00055_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_55); c00056_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_56); c00057_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_57); c00058_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_58); c00059_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_59); c00060_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_60); c00061_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_61); c00062_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_62); c00063_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_63); c00064_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_64); c00065_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_65); c00066_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_66); c00067_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_67); c00068_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_68); c00069_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_69); c00070_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_70); c00071_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_71); c00072_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_72); c00073_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_73); c00074_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_74); c00075_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_75); c00076_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_76); c00077_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_77); c00078_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_78); c00079_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_79); c00080_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_80); c00081_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_81); c00082_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_82); c00083_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_83); c00084_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_84); c00085_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_85); c00086_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_86); c00088_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_88); c00089_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_89); c00090_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_90); c00091_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_91); c00092_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_92); c00093_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_93); c00094_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_94); c00095_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_95); c00096_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_96); c00097_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_97); c00098_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_98); c00099_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_99); c00100_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_100); c00101_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_101); c00102_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_102); c00103_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_103); c00104_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_104); c00105_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_105); c00106_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_106); c00107_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_107); c00108_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_108); c00109_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_109); c00110_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_110); c00111_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_111); c00112_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_112); c00113_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_113); c00114_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_114); c00115_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_115); c00116_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_116); c00117_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_117); c00118_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_118); c00119_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_119); c00120_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_120); c00121_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_121); c00122_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_122); c00123_gnlPro.. (original name was: gnl|Prokka|DNEGJBAD_123)

Compact view

c00004_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 37,350 - 60,325 nt. (total: 22,976 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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c00012_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 68,034 - 91,504 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00021_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 25,269 nt. (total: 25,269 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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No matches found.

c00025_gnlPro.. - Region 1 - porA

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Location: 21,840 - 44,675 nt. (total: 22,836 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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core biosynthetic genes

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c00027_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 117,109 - 141,966 nt. (total: 24,858 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00032_gnlPro.. - Region 1 - succinate2propionate

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Location: 21,065 - 45,593 nt. (total: 24,529 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00053_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 17,969 nt. (total: 17,969 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00087_gnlPro.. - Region 1 - OD_unknown

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Location: 15,240 - 38,403 nt. (total: 23,164 nt) Show pHMM detection rules used

Region on contig edge.

OD_unknown: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [CoA_binding, CoA_binding_2, Ligase_CoA, PTAC, Succ_CoA_lig]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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