GCA_034129665.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaCBJCLIBI_8 (original name was: gnl|Prokka|CBJCLIBI_8)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	arylpolyene	458,215	505,726	flexirubin	Other	48%

gnlProkkaCBJCLIBI_13 (original name was: gnl|Prokka|CBJCLIBI_13)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	RiPP-like	26,233	38,407

gnlProkkaCBJCLIBI_19 (original name was: gnl|Prokka|CBJCLIBI_19)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	RRE-containing	63,747	84,534

No secondary metabolite regions were found in these records:: gnlProkkaCBJCLIBI_1 (original name was: gnl|Prokka|CBJCLIBI_1); gnlProkkaCBJCLIBI_2 (original name was: gnl|Prokka|CBJCLIBI_2); gnlProkkaCBJCLIBI_3 (original name was: gnl|Prokka|CBJCLIBI_3); gnlProkkaCBJCLIBI_4 (original name was: gnl|Prokka|CBJCLIBI_4); gnlProkkaCBJCLIBI_5 (original name was: gnl|Prokka|CBJCLIBI_5); gnlProkkaCBJCLIBI_6 (original name was: gnl|Prokka|CBJCLIBI_6); gnlProkkaCBJCLIBI_7 (original name was: gnl|Prokka|CBJCLIBI_7); gnlProkkaCBJCLIBI_9 (original name was: gnl|Prokka|CBJCLIBI_9); gnlProkkaCBJCLIBI_10 (original name was: gnl|Prokka|CBJCLIBI_10); gnlProkkaCBJCLIBI_11 (original name was: gnl|Prokka|CBJCLIBI_11); gnlProkkaCBJCLIBI_12 (original name was: gnl|Prokka|CBJCLIBI_12); gnlProkkaCBJCLIBI_14 (original name was: gnl|Prokka|CBJCLIBI_14); gnlProkkaCBJCLIBI_15 (original name was: gnl|Prokka|CBJCLIBI_15); gnlProkkaCBJCLIBI_16 (original name was: gnl|Prokka|CBJCLIBI_16); gnlProkkaCBJCLIBI_17 (original name was: gnl|Prokka|CBJCLIBI_17); gnlProkkaCBJCLIBI_18 (original name was: gnl|Prokka|CBJCLIBI_18); gnlProkkaCBJCLIBI_20 (original name was: gnl|Prokka|CBJCLIBI_20); gnlProkkaCBJCLIBI_21 (original name was: gnl|Prokka|CBJCLIBI_21); gnlProkkaCBJCLIBI_22 (original name was: gnl|Prokka|CBJCLIBI_22); gnlProkkaCBJCLIBI_23 (original name was: gnl|Prokka|CBJCLIBI_23); gnlProkkaCBJCLIBI_24 (original name was: gnl|Prokka|CBJCLIBI_24); gnlProkkaCBJCLIBI_25 (original name was: gnl|Prokka|CBJCLIBI_25); gnlProkkaCBJCLIBI_26 (original name was: gnl|Prokka|CBJCLIBI_26); gnlProkkaCBJCLIBI_27 (original name was: gnl|Prokka|CBJCLIBI_27); gnlProkkaCBJCLIBI_28 (original name was: gnl|Prokka|CBJCLIBI_28); gnlProkkaCBJCLIBI_29 (original name was: gnl|Prokka|CBJCLIBI_29); gnlProkkaCBJCLIBI_30 (original name was: gnl|Prokka|CBJCLIBI_30); gnlProkkaCBJCLIBI_31 (original name was: gnl|Prokka|CBJCLIBI_31); gnlProkkaCBJCLIBI_32 (original name was: gnl|Prokka|CBJCLIBI_32); gnlProkkaCBJCLIBI_33 (original name was: gnl|Prokka|CBJCLIBI_33); gnlProkkaCBJCLIBI_34 (original name was: gnl|Prokka|CBJCLIBI_34); gnlProkkaCBJCLIBI_35 (original name was: gnl|Prokka|CBJCLIBI_35); gnlProkkaCBJCLIBI_36 (original name was: gnl|Prokka|CBJCLIBI_36); gnlProkkaCBJCLIBI_37 (original name was: gnl|Prokka|CBJCLIBI_37); gnlProkkaCBJCLIBI_38 (original name was: gnl|Prokka|CBJCLIBI_38); gnlProkkaCBJCLIBI_39 (original name was: gnl|Prokka|CBJCLIBI_39)

Compact view

gnlProkkaCBJCLIBI_8 - Region 1 - arylpolyene

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Location: 458,215 - 505,726 nt. (total: 47,512 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene overview

NRPS/PKS domains

KnownClusterBlast

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg8_419

AMP-binding (55..293): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMVITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

gnlProkkaCBJCLIBI_13 - Region 1 - RiPP-like

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Location: 26,233 - 38,407 nt. (total: 12,175 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaCBJCLIBI_19 - Region 1 - RRE-containing

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Location: 63,747 - 84,534 nt. (total: 20,788 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.