GCA_034132945.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGIKKFKAH_16 (original name was: gnl|Prokka|GIKKFKAH_16)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	RRE-containing	457,900	478,687

gnlProkkaGIKKFKAH_34 (original name was: gnl|Prokka|GIKKFKAH_34)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	RiPP-like	1	9,863
Region 34.2	arylpolyene	207,272	254,783	flexirubin	Other	36%

Region	Type	From	To	Most similar known cluster	Similarity
Region 16.1	RRE-containing	457,900	478,687
Region 34.1	RiPP-like	1	9,863
Region 34.2	arylpolyene	207,272	254,783	flexirubin	Other	36%

No secondary metabolite regions were found in these records:: gnlProkkaGIKKFKAH_1 (original name was: gnl|Prokka|GIKKFKAH_1); gnlProkkaGIKKFKAH_2 (original name was: gnl|Prokka|GIKKFKAH_2); gnlProkkaGIKKFKAH_3 (original name was: gnl|Prokka|GIKKFKAH_3); gnlProkkaGIKKFKAH_4 (original name was: gnl|Prokka|GIKKFKAH_4); gnlProkkaGIKKFKAH_5 (original name was: gnl|Prokka|GIKKFKAH_5); gnlProkkaGIKKFKAH_6 (original name was: gnl|Prokka|GIKKFKAH_6); gnlProkkaGIKKFKAH_7 (original name was: gnl|Prokka|GIKKFKAH_7); gnlProkkaGIKKFKAH_8 (original name was: gnl|Prokka|GIKKFKAH_8); gnlProkkaGIKKFKAH_9 (original name was: gnl|Prokka|GIKKFKAH_9); gnlProkkaGIKKFKAH_10 (original name was: gnl|Prokka|GIKKFKAH_10); gnlProkkaGIKKFKAH_11 (original name was: gnl|Prokka|GIKKFKAH_11); gnlProkkaGIKKFKAH_12 (original name was: gnl|Prokka|GIKKFKAH_12); gnlProkkaGIKKFKAH_13 (original name was: gnl|Prokka|GIKKFKAH_13); gnlProkkaGIKKFKAH_14 (original name was: gnl|Prokka|GIKKFKAH_14); gnlProkkaGIKKFKAH_15 (original name was: gnl|Prokka|GIKKFKAH_15); gnlProkkaGIKKFKAH_17 (original name was: gnl|Prokka|GIKKFKAH_17); gnlProkkaGIKKFKAH_18 (original name was: gnl|Prokka|GIKKFKAH_18); gnlProkkaGIKKFKAH_19 (original name was: gnl|Prokka|GIKKFKAH_19); gnlProkkaGIKKFKAH_20 (original name was: gnl|Prokka|GIKKFKAH_20); gnlProkkaGIKKFKAH_21 (original name was: gnl|Prokka|GIKKFKAH_21); gnlProkkaGIKKFKAH_22 (original name was: gnl|Prokka|GIKKFKAH_22); gnlProkkaGIKKFKAH_23 (original name was: gnl|Prokka|GIKKFKAH_23); gnlProkkaGIKKFKAH_24 (original name was: gnl|Prokka|GIKKFKAH_24); gnlProkkaGIKKFKAH_25 (original name was: gnl|Prokka|GIKKFKAH_25); gnlProkkaGIKKFKAH_26 (original name was: gnl|Prokka|GIKKFKAH_26); gnlProkkaGIKKFKAH_27 (original name was: gnl|Prokka|GIKKFKAH_27); gnlProkkaGIKKFKAH_28 (original name was: gnl|Prokka|GIKKFKAH_28); gnlProkkaGIKKFKAH_29 (original name was: gnl|Prokka|GIKKFKAH_29); gnlProkkaGIKKFKAH_30 (original name was: gnl|Prokka|GIKKFKAH_30); gnlProkkaGIKKFKAH_31 (original name was: gnl|Prokka|GIKKFKAH_31); gnlProkkaGIKKFKAH_32 (original name was: gnl|Prokka|GIKKFKAH_32); gnlProkkaGIKKFKAH_33 (original name was: gnl|Prokka|GIKKFKAH_33); gnlProkkaGIKKFKAH_35 (original name was: gnl|Prokka|GIKKFKAH_35); gnlProkkaGIKKFKAH_36 (original name was: gnl|Prokka|GIKKFKAH_36); gnlProkkaGIKKFKAH_37 (original name was: gnl|Prokka|GIKKFKAH_37); gnlProkkaGIKKFKAH_38 (original name was: gnl|Prokka|GIKKFKAH_38); gnlProkkaGIKKFKAH_39 (original name was: gnl|Prokka|GIKKFKAH_39); gnlProkkaGIKKFKAH_40 (original name was: gnl|Prokka|GIKKFKAH_40); gnlProkkaGIKKFKAH_41 (original name was: gnl|Prokka|GIKKFKAH_41); gnlProkkaGIKKFKAH_42 (original name was: gnl|Prokka|GIKKFKAH_42); gnlProkkaGIKKFKAH_43 (original name was: gnl|Prokka|GIKKFKAH_43); gnlProkkaGIKKFKAH_44 (original name was: gnl|Prokka|GIKKFKAH_44); gnlProkkaGIKKFKAH_45 (original name was: gnl|Prokka|GIKKFKAH_45); gnlProkkaGIKKFKAH_46 (original name was: gnl|Prokka|GIKKFKAH_46); gnlProkkaGIKKFKAH_47 (original name was: gnl|Prokka|GIKKFKAH_47); gnlProkkaGIKKFKAH_48 (original name was: gnl|Prokka|GIKKFKAH_48)

Compact view

gnlProkkaGIKKFKAH_16 - Region 1 - RRE-containing

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Location: 457,900 - 478,687 nt. (total: 20,788 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGIKKFKAH_34 - Region 1 - RiPP-like

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Location: 1 - 9,863 nt. (total: 9,863 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGIKKFKAH_34 - Region 2 - arylpolyene

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Location: 207,272 - 254,783 nt. (total: 47,512 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1