GCA_034133345.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJJJCBCFO_2 (original name was: gnl|Prokka|JJJCBCFO_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RRE-containing	181,053	201,406	polysaccharide C	Saccharide	16%

gnlProkkaJJJCBCFO_11 (original name was: gnl|Prokka|JJJCBCFO_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	NRPS-like	66,615	109,044

gnlProkkaJJJCBCFO_14 (original name was: gnl|Prokka|JJJCBCFO_14)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	phosphonate	1	5,577	polysaccharide B	Saccharide	16%

No secondary metabolite regions were found in these records:: gnlProkkaJJJCBCFO_1 (original name was: gnl|Prokka|JJJCBCFO_1); gnlProkkaJJJCBCFO_3 (original name was: gnl|Prokka|JJJCBCFO_3); gnlProkkaJJJCBCFO_4 (original name was: gnl|Prokka|JJJCBCFO_4); gnlProkkaJJJCBCFO_5 (original name was: gnl|Prokka|JJJCBCFO_5); gnlProkkaJJJCBCFO_6 (original name was: gnl|Prokka|JJJCBCFO_6); gnlProkkaJJJCBCFO_7 (original name was: gnl|Prokka|JJJCBCFO_7); gnlProkkaJJJCBCFO_8 (original name was: gnl|Prokka|JJJCBCFO_8); gnlProkkaJJJCBCFO_9 (original name was: gnl|Prokka|JJJCBCFO_9); gnlProkkaJJJCBCFO_10 (original name was: gnl|Prokka|JJJCBCFO_10); gnlProkkaJJJCBCFO_12 (original name was: gnl|Prokka|JJJCBCFO_12); gnlProkkaJJJCBCFO_13 (original name was: gnl|Prokka|JJJCBCFO_13); gnlProkkaJJJCBCFO_15 (original name was: gnl|Prokka|JJJCBCFO_15); gnlProkkaJJJCBCFO_16 (original name was: gnl|Prokka|JJJCBCFO_16); gnlProkkaJJJCBCFO_17 (original name was: gnl|Prokka|JJJCBCFO_17); gnlProkkaJJJCBCFO_18 (original name was: gnl|Prokka|JJJCBCFO_18); gnlProkkaJJJCBCFO_19 (original name was: gnl|Prokka|JJJCBCFO_19); gnlProkkaJJJCBCFO_20 (original name was: gnl|Prokka|JJJCBCFO_20); gnlProkkaJJJCBCFO_21 (original name was: gnl|Prokka|JJJCBCFO_21); gnlProkkaJJJCBCFO_22 (original name was: gnl|Prokka|JJJCBCFO_22); gnlProkkaJJJCBCFO_23 (original name was: gnl|Prokka|JJJCBCFO_23); gnlProkkaJJJCBCFO_24 (original name was: gnl|Prokka|JJJCBCFO_24); gnlProkkaJJJCBCFO_25 (original name was: gnl|Prokka|JJJCBCFO_25); gnlProkkaJJJCBCFO_26 (original name was: gnl|Prokka|JJJCBCFO_26); gnlProkkaJJJCBCFO_27 (original name was: gnl|Prokka|JJJCBCFO_27); gnlProkkaJJJCBCFO_28 (original name was: gnl|Prokka|JJJCBCFO_28); gnlProkkaJJJCBCFO_29 (original name was: gnl|Prokka|JJJCBCFO_29); gnlProkkaJJJCBCFO_30 (original name was: gnl|Prokka|JJJCBCFO_30); gnlProkkaJJJCBCFO_31 (original name was: gnl|Prokka|JJJCBCFO_31); gnlProkkaJJJCBCFO_32 (original name was: gnl|Prokka|JJJCBCFO_32); gnlProkkaJJJCBCFO_33 (original name was: gnl|Prokka|JJJCBCFO_33); gnlProkkaJJJCBCFO_34 (original name was: gnl|Prokka|JJJCBCFO_34); gnlProkkaJJJCBCFO_35 (original name was: gnl|Prokka|JJJCBCFO_35); gnlProkkaJJJCBCFO_36 (original name was: gnl|Prokka|JJJCBCFO_36)

Compact view

gnlProkkaJJJCBCFO_2 - Region 1 - RRE-containing

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Location: 181,053 - 201,406 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaJJJCBCFO_11 - Region 1 - NRPS-like

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Location: 66,615 - 109,044 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

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transport-related genes

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resistance

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NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 66614 - 109044:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg11_87

AMP-binding (12..401): X

nrpys: Leu, Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaJJJCBCFO_14 - Region 1 - phosphonate

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Location: 1 - 5,577 nt. (total: 5,577 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1