GCA_034133905.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaEKDOKMDI_3 (original name was: gnl|Prokka|EKDOKMDI_3)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	NRPS-like	98,733	141,162

gnlProkkaEKDOKMDI_20 (original name was: gnl|Prokka|EKDOKMDI_20)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	RRE-containing	156,903	177,256	polysaccharide C	Saccharide	16%

gnlProkkaEKDOKMDI_29 (original name was: gnl|Prokka|EKDOKMDI_29)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	phosphonate	47,988	79,893	polysaccharide B	Saccharide	33%

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	NRPS-like	98,733	141,162
Region 20.1	RRE-containing	156,903	177,256	polysaccharide C	Saccharide	16%
Region 29.1	phosphonate	47,988	79,893	polysaccharide B	Saccharide	33%

No secondary metabolite regions were found in these records:: gnlProkkaEKDOKMDI_1 (original name was: gnl|Prokka|EKDOKMDI_1); gnlProkkaEKDOKMDI_2 (original name was: gnl|Prokka|EKDOKMDI_2); gnlProkkaEKDOKMDI_4 (original name was: gnl|Prokka|EKDOKMDI_4); gnlProkkaEKDOKMDI_5 (original name was: gnl|Prokka|EKDOKMDI_5); gnlProkkaEKDOKMDI_6 (original name was: gnl|Prokka|EKDOKMDI_6); gnlProkkaEKDOKMDI_7 (original name was: gnl|Prokka|EKDOKMDI_7); gnlProkkaEKDOKMDI_8 (original name was: gnl|Prokka|EKDOKMDI_8); gnlProkkaEKDOKMDI_9 (original name was: gnl|Prokka|EKDOKMDI_9); gnlProkkaEKDOKMDI_10 (original name was: gnl|Prokka|EKDOKMDI_10); gnlProkkaEKDOKMDI_11 (original name was: gnl|Prokka|EKDOKMDI_11); gnlProkkaEKDOKMDI_12 (original name was: gnl|Prokka|EKDOKMDI_12); gnlProkkaEKDOKMDI_13 (original name was: gnl|Prokka|EKDOKMDI_13); gnlProkkaEKDOKMDI_14 (original name was: gnl|Prokka|EKDOKMDI_14); gnlProkkaEKDOKMDI_15 (original name was: gnl|Prokka|EKDOKMDI_15); gnlProkkaEKDOKMDI_16 (original name was: gnl|Prokka|EKDOKMDI_16); gnlProkkaEKDOKMDI_17 (original name was: gnl|Prokka|EKDOKMDI_17); gnlProkkaEKDOKMDI_18 (original name was: gnl|Prokka|EKDOKMDI_18); gnlProkkaEKDOKMDI_19 (original name was: gnl|Prokka|EKDOKMDI_19); gnlProkkaEKDOKMDI_21 (original name was: gnl|Prokka|EKDOKMDI_21); gnlProkkaEKDOKMDI_22 (original name was: gnl|Prokka|EKDOKMDI_22); gnlProkkaEKDOKMDI_23 (original name was: gnl|Prokka|EKDOKMDI_23); gnlProkkaEKDOKMDI_24 (original name was: gnl|Prokka|EKDOKMDI_24); gnlProkkaEKDOKMDI_25 (original name was: gnl|Prokka|EKDOKMDI_25); gnlProkkaEKDOKMDI_26 (original name was: gnl|Prokka|EKDOKMDI_26); gnlProkkaEKDOKMDI_27 (original name was: gnl|Prokka|EKDOKMDI_27); gnlProkkaEKDOKMDI_28 (original name was: gnl|Prokka|EKDOKMDI_28)

Compact view

gnlProkkaEKDOKMDI_3 - Region 1 - NRPS-like

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Location: 98,733 - 141,162 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 98732 - 141162:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg3_128

AMP-binding (12..401): X

nrpys: Leu, Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaEKDOKMDI_20 - Region 1 - RRE-containing

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Location: 156,903 - 177,256 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaEKDOKMDI_29 - Region 1 - phosphonate

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Location: 47,988 - 79,893 nt. (total: 31,906 nt) Show pHMM detection rules used

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1