GCA_034134405.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaLFIDKOHG_11 (original name was: gnl|Prokka|LFIDKOHG_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	RRE-containing	1	16,275

gnlProkkaLFIDKOHG_56 (original name was: gnl|Prokka|LFIDKOHG_56)

Region	Type	From	To	Most similar known cluster		Similarity
Region 56.1	RiPP-like	1	8,687
Region 56.2	arylpolyene	179,054	226,565	flexirubin	Other	48%

Region	Type	From	To	Most similar known cluster	Similarity
Region 11.1	RRE-containing	1	16,275
Region 56.1	RiPP-like	1	8,687
Region 56.2	arylpolyene	179,054	226,565	flexirubin	Other	48%

No secondary metabolite regions were found in these records:: gnlProkkaLFIDKOHG_1 (original name was: gnl|Prokka|LFIDKOHG_1); gnlProkkaLFIDKOHG_2 (original name was: gnl|Prokka|LFIDKOHG_2); gnlProkkaLFIDKOHG_3 (original name was: gnl|Prokka|LFIDKOHG_3); gnlProkkaLFIDKOHG_4 (original name was: gnl|Prokka|LFIDKOHG_4); gnlProkkaLFIDKOHG_5 (original name was: gnl|Prokka|LFIDKOHG_5); gnlProkkaLFIDKOHG_6 (original name was: gnl|Prokka|LFIDKOHG_6); gnlProkkaLFIDKOHG_7 (original name was: gnl|Prokka|LFIDKOHG_7); gnlProkkaLFIDKOHG_8 (original name was: gnl|Prokka|LFIDKOHG_8); gnlProkkaLFIDKOHG_9 (original name was: gnl|Prokka|LFIDKOHG_9); gnlProkkaLFIDKOHG_10 (original name was: gnl|Prokka|LFIDKOHG_10); gnlProkkaLFIDKOHG_12 (original name was: gnl|Prokka|LFIDKOHG_12); gnlProkkaLFIDKOHG_13 (original name was: gnl|Prokka|LFIDKOHG_13); gnlProkkaLFIDKOHG_14 (original name was: gnl|Prokka|LFIDKOHG_14); gnlProkkaLFIDKOHG_15 (original name was: gnl|Prokka|LFIDKOHG_15); gnlProkkaLFIDKOHG_16 (original name was: gnl|Prokka|LFIDKOHG_16); gnlProkkaLFIDKOHG_17 (original name was: gnl|Prokka|LFIDKOHG_17); gnlProkkaLFIDKOHG_18 (original name was: gnl|Prokka|LFIDKOHG_18); gnlProkkaLFIDKOHG_19 (original name was: gnl|Prokka|LFIDKOHG_19); gnlProkkaLFIDKOHG_20 (original name was: gnl|Prokka|LFIDKOHG_20); gnlProkkaLFIDKOHG_21 (original name was: gnl|Prokka|LFIDKOHG_21); gnlProkkaLFIDKOHG_22 (original name was: gnl|Prokka|LFIDKOHG_22); gnlProkkaLFIDKOHG_23 (original name was: gnl|Prokka|LFIDKOHG_23); gnlProkkaLFIDKOHG_24 (original name was: gnl|Prokka|LFIDKOHG_24); gnlProkkaLFIDKOHG_25 (original name was: gnl|Prokka|LFIDKOHG_25); gnlProkkaLFIDKOHG_26 (original name was: gnl|Prokka|LFIDKOHG_26); gnlProkkaLFIDKOHG_27 (original name was: gnl|Prokka|LFIDKOHG_27); gnlProkkaLFIDKOHG_28 (original name was: gnl|Prokka|LFIDKOHG_28); gnlProkkaLFIDKOHG_29 (original name was: gnl|Prokka|LFIDKOHG_29); gnlProkkaLFIDKOHG_30 (original name was: gnl|Prokka|LFIDKOHG_30); gnlProkkaLFIDKOHG_31 (original name was: gnl|Prokka|LFIDKOHG_31); gnlProkkaLFIDKOHG_32 (original name was: gnl|Prokka|LFIDKOHG_32); gnlProkkaLFIDKOHG_33 (original name was: gnl|Prokka|LFIDKOHG_33); gnlProkkaLFIDKOHG_34 (original name was: gnl|Prokka|LFIDKOHG_34); gnlProkkaLFIDKOHG_35 (original name was: gnl|Prokka|LFIDKOHG_35); gnlProkkaLFIDKOHG_36 (original name was: gnl|Prokka|LFIDKOHG_36); gnlProkkaLFIDKOHG_37 (original name was: gnl|Prokka|LFIDKOHG_37); gnlProkkaLFIDKOHG_38 (original name was: gnl|Prokka|LFIDKOHG_38); gnlProkkaLFIDKOHG_39 (original name was: gnl|Prokka|LFIDKOHG_39); gnlProkkaLFIDKOHG_40 (original name was: gnl|Prokka|LFIDKOHG_40); gnlProkkaLFIDKOHG_41 (original name was: gnl|Prokka|LFIDKOHG_41); gnlProkkaLFIDKOHG_42 (original name was: gnl|Prokka|LFIDKOHG_42); gnlProkkaLFIDKOHG_43 (original name was: gnl|Prokka|LFIDKOHG_43); gnlProkkaLFIDKOHG_44 (original name was: gnl|Prokka|LFIDKOHG_44); gnlProkkaLFIDKOHG_45 (original name was: gnl|Prokka|LFIDKOHG_45); gnlProkkaLFIDKOHG_46 (original name was: gnl|Prokka|LFIDKOHG_46); gnlProkkaLFIDKOHG_47 (original name was: gnl|Prokka|LFIDKOHG_47); gnlProkkaLFIDKOHG_48 (original name was: gnl|Prokka|LFIDKOHG_48); gnlProkkaLFIDKOHG_49 (original name was: gnl|Prokka|LFIDKOHG_49); gnlProkkaLFIDKOHG_50 (original name was: gnl|Prokka|LFIDKOHG_50); gnlProkkaLFIDKOHG_51 (original name was: gnl|Prokka|LFIDKOHG_51); gnlProkkaLFIDKOHG_52 (original name was: gnl|Prokka|LFIDKOHG_52); gnlProkkaLFIDKOHG_53 (original name was: gnl|Prokka|LFIDKOHG_53); gnlProkkaLFIDKOHG_54 (original name was: gnl|Prokka|LFIDKOHG_54); gnlProkkaLFIDKOHG_55 (original name was: gnl|Prokka|LFIDKOHG_55); gnlProkkaLFIDKOHG_57 (original name was: gnl|Prokka|LFIDKOHG_57); gnlProkkaLFIDKOHG_58 (original name was: gnl|Prokka|LFIDKOHG_58); gnlProkkaLFIDKOHG_59 (original name was: gnl|Prokka|LFIDKOHG_59); gnlProkkaLFIDKOHG_60 (original name was: gnl|Prokka|LFIDKOHG_60); gnlProkkaLFIDKOHG_61 (original name was: gnl|Prokka|LFIDKOHG_61)

Compact view

gnlProkkaLFIDKOHG_11 - Region 1 - RRE-containing

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Location: 1 - 16,275 nt. (total: 16,275 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLFIDKOHG_56 - Region 1 - RiPP-like

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Location: 1 - 8,687 nt. (total: 8,687 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaLFIDKOHG_56 - Region 2 - arylpolyene

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Location: 179,054 - 226,565 nt. (total: 47,512 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg56_122

AMP-binding (70..293): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMVITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)