GCA_034134765.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPAPCIEIJ_3 (original name was: gnl|Prokka|PAPCIEIJ_3)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	RiPP-like	1	9,863

gnlProkkaPAPCIEIJ_4 (original name was: gnl|Prokka|PAPCIEIJ_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	betalactone	50,403	75,881	legionaminic acid	Other	25%

gnlProkkaPAPCIEIJ_12 (original name was: gnl|Prokka|PAPCIEIJ_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	RRE-containing	31,048	47,093

gnlProkkaPAPCIEIJ_17 (original name was: gnl|Prokka|PAPCIEIJ_17)

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	arylpolyene	197,349	244,860	flexirubin	Other	48%

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	RiPP-like	1	9,863
Region 4.1	betalactone	50,403	75,881	legionaminic acid	Other	25%
Region 12.1	RRE-containing	31,048	47,093
Region 17.1	arylpolyene	197,349	244,860	flexirubin	Other	48%

No secondary metabolite regions were found in these records:: gnlProkkaPAPCIEIJ_1 (original name was: gnl|Prokka|PAPCIEIJ_1); gnlProkkaPAPCIEIJ_2 (original name was: gnl|Prokka|PAPCIEIJ_2); gnlProkkaPAPCIEIJ_5 (original name was: gnl|Prokka|PAPCIEIJ_5); gnlProkkaPAPCIEIJ_6 (original name was: gnl|Prokka|PAPCIEIJ_6); gnlProkkaPAPCIEIJ_7 (original name was: gnl|Prokka|PAPCIEIJ_7); gnlProkkaPAPCIEIJ_8 (original name was: gnl|Prokka|PAPCIEIJ_8); gnlProkkaPAPCIEIJ_9 (original name was: gnl|Prokka|PAPCIEIJ_9); gnlProkkaPAPCIEIJ_10 (original name was: gnl|Prokka|PAPCIEIJ_10); gnlProkkaPAPCIEIJ_11 (original name was: gnl|Prokka|PAPCIEIJ_11); gnlProkkaPAPCIEIJ_13 (original name was: gnl|Prokka|PAPCIEIJ_13); gnlProkkaPAPCIEIJ_14 (original name was: gnl|Prokka|PAPCIEIJ_14); gnlProkkaPAPCIEIJ_15 (original name was: gnl|Prokka|PAPCIEIJ_15); gnlProkkaPAPCIEIJ_16 (original name was: gnl|Prokka|PAPCIEIJ_16); gnlProkkaPAPCIEIJ_18 (original name was: gnl|Prokka|PAPCIEIJ_18); gnlProkkaPAPCIEIJ_19 (original name was: gnl|Prokka|PAPCIEIJ_19); gnlProkkaPAPCIEIJ_20 (original name was: gnl|Prokka|PAPCIEIJ_20); gnlProkkaPAPCIEIJ_21 (original name was: gnl|Prokka|PAPCIEIJ_21); gnlProkkaPAPCIEIJ_22 (original name was: gnl|Prokka|PAPCIEIJ_22); gnlProkkaPAPCIEIJ_23 (original name was: gnl|Prokka|PAPCIEIJ_23); gnlProkkaPAPCIEIJ_24 (original name was: gnl|Prokka|PAPCIEIJ_24); gnlProkkaPAPCIEIJ_25 (original name was: gnl|Prokka|PAPCIEIJ_25); gnlProkkaPAPCIEIJ_26 (original name was: gnl|Prokka|PAPCIEIJ_26); gnlProkkaPAPCIEIJ_27 (original name was: gnl|Prokka|PAPCIEIJ_27); gnlProkkaPAPCIEIJ_28 (original name was: gnl|Prokka|PAPCIEIJ_28); gnlProkkaPAPCIEIJ_29 (original name was: gnl|Prokka|PAPCIEIJ_29); gnlProkkaPAPCIEIJ_30 (original name was: gnl|Prokka|PAPCIEIJ_30); gnlProkkaPAPCIEIJ_31 (original name was: gnl|Prokka|PAPCIEIJ_31); gnlProkkaPAPCIEIJ_32 (original name was: gnl|Prokka|PAPCIEIJ_32); gnlProkkaPAPCIEIJ_33 (original name was: gnl|Prokka|PAPCIEIJ_33); gnlProkkaPAPCIEIJ_34 (original name was: gnl|Prokka|PAPCIEIJ_34); gnlProkkaPAPCIEIJ_35 (original name was: gnl|Prokka|PAPCIEIJ_35); gnlProkkaPAPCIEIJ_36 (original name was: gnl|Prokka|PAPCIEIJ_36); gnlProkkaPAPCIEIJ_37 (original name was: gnl|Prokka|PAPCIEIJ_37); gnlProkkaPAPCIEIJ_38 (original name was: gnl|Prokka|PAPCIEIJ_38); gnlProkkaPAPCIEIJ_39 (original name was: gnl|Prokka|PAPCIEIJ_39); gnlProkkaPAPCIEIJ_40 (original name was: gnl|Prokka|PAPCIEIJ_40); gnlProkkaPAPCIEIJ_41 (original name was: gnl|Prokka|PAPCIEIJ_41); gnlProkkaPAPCIEIJ_42 (original name was: gnl|Prokka|PAPCIEIJ_42); gnlProkkaPAPCIEIJ_43 (original name was: gnl|Prokka|PAPCIEIJ_43); gnlProkkaPAPCIEIJ_44 (original name was: gnl|Prokka|PAPCIEIJ_44); gnlProkkaPAPCIEIJ_45 (original name was: gnl|Prokka|PAPCIEIJ_45); gnlProkkaPAPCIEIJ_46 (original name was: gnl|Prokka|PAPCIEIJ_46)

Compact view

gnlProkkaPAPCIEIJ_3 - Region 1 - RiPP-like

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Location: 1 - 9,863 nt. (total: 9,863 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPAPCIEIJ_4 - Region 1 - betalactone

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Location: 50,403 - 75,881 nt. (total: 25,479 nt) Show pHMM detection rules used

betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaPAPCIEIJ_12 - Region 1 - RRE-containing

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Location: 31,048 - 47,093 nt. (total: 16,046 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPAPCIEIJ_17 - Region 1 - arylpolyene

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Location: 197,349 - 244,860 nt. (total: 47,512 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg17_210

AMP-binding (70..293): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMVITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)