GCA_034134885.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaIONCFDAA_3 (original name was: gnl|Prokka|IONCFDAA_3)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	lanthipeptide-class-i	41,961	72,167

gnlProkkaIONCFDAA_39 (original name was: gnl|Prokka|IONCFDAA_39)

Region	Type	From	To	Most similar known cluster		Similarity
Region 39.1	RRE-containing	26,057	46,410	polysaccharide C	Saccharide	16%

gnlProkkaIONCFDAA_47 (original name was: gnl|Prokka|IONCFDAA_47)

Region	Type	From	To	Most similar known cluster		Similarity
Region 47.1	NRPS-like	72,469	114,898

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	lanthipeptide-class-i	41,961	72,167
Region 39.1	RRE-containing	26,057	46,410	polysaccharide C	Saccharide	16%
Region 47.1	NRPS-like	72,469	114,898

No secondary metabolite regions were found in these records:: gnlProkkaIONCFDAA_1 (original name was: gnl|Prokka|IONCFDAA_1); gnlProkkaIONCFDAA_2 (original name was: gnl|Prokka|IONCFDAA_2); gnlProkkaIONCFDAA_4 (original name was: gnl|Prokka|IONCFDAA_4); gnlProkkaIONCFDAA_5 (original name was: gnl|Prokka|IONCFDAA_5); gnlProkkaIONCFDAA_6 (original name was: gnl|Prokka|IONCFDAA_6); gnlProkkaIONCFDAA_7 (original name was: gnl|Prokka|IONCFDAA_7); gnlProkkaIONCFDAA_8 (original name was: gnl|Prokka|IONCFDAA_8); gnlProkkaIONCFDAA_9 (original name was: gnl|Prokka|IONCFDAA_9); gnlProkkaIONCFDAA_10 (original name was: gnl|Prokka|IONCFDAA_10); gnlProkkaIONCFDAA_11 (original name was: gnl|Prokka|IONCFDAA_11); gnlProkkaIONCFDAA_12 (original name was: gnl|Prokka|IONCFDAA_12); gnlProkkaIONCFDAA_13 (original name was: gnl|Prokka|IONCFDAA_13); gnlProkkaIONCFDAA_14 (original name was: gnl|Prokka|IONCFDAA_14); gnlProkkaIONCFDAA_15 (original name was: gnl|Prokka|IONCFDAA_15); gnlProkkaIONCFDAA_16 (original name was: gnl|Prokka|IONCFDAA_16); gnlProkkaIONCFDAA_17 (original name was: gnl|Prokka|IONCFDAA_17); gnlProkkaIONCFDAA_18 (original name was: gnl|Prokka|IONCFDAA_18); gnlProkkaIONCFDAA_19 (original name was: gnl|Prokka|IONCFDAA_19); gnlProkkaIONCFDAA_20 (original name was: gnl|Prokka|IONCFDAA_20); gnlProkkaIONCFDAA_21 (original name was: gnl|Prokka|IONCFDAA_21); gnlProkkaIONCFDAA_22 (original name was: gnl|Prokka|IONCFDAA_22); gnlProkkaIONCFDAA_23 (original name was: gnl|Prokka|IONCFDAA_23); gnlProkkaIONCFDAA_24 (original name was: gnl|Prokka|IONCFDAA_24); gnlProkkaIONCFDAA_25 (original name was: gnl|Prokka|IONCFDAA_25); gnlProkkaIONCFDAA_26 (original name was: gnl|Prokka|IONCFDAA_26); gnlProkkaIONCFDAA_27 (original name was: gnl|Prokka|IONCFDAA_27); gnlProkkaIONCFDAA_28 (original name was: gnl|Prokka|IONCFDAA_28); gnlProkkaIONCFDAA_29 (original name was: gnl|Prokka|IONCFDAA_29); gnlProkkaIONCFDAA_30 (original name was: gnl|Prokka|IONCFDAA_30); gnlProkkaIONCFDAA_31 (original name was: gnl|Prokka|IONCFDAA_31); gnlProkkaIONCFDAA_32 (original name was: gnl|Prokka|IONCFDAA_32); gnlProkkaIONCFDAA_33 (original name was: gnl|Prokka|IONCFDAA_33); gnlProkkaIONCFDAA_34 (original name was: gnl|Prokka|IONCFDAA_34); gnlProkkaIONCFDAA_35 (original name was: gnl|Prokka|IONCFDAA_35); gnlProkkaIONCFDAA_36 (original name was: gnl|Prokka|IONCFDAA_36); gnlProkkaIONCFDAA_37 (original name was: gnl|Prokka|IONCFDAA_37); gnlProkkaIONCFDAA_38 (original name was: gnl|Prokka|IONCFDAA_38); gnlProkkaIONCFDAA_40 (original name was: gnl|Prokka|IONCFDAA_40); gnlProkkaIONCFDAA_41 (original name was: gnl|Prokka|IONCFDAA_41); gnlProkkaIONCFDAA_42 (original name was: gnl|Prokka|IONCFDAA_42); gnlProkkaIONCFDAA_43 (original name was: gnl|Prokka|IONCFDAA_43); gnlProkkaIONCFDAA_44 (original name was: gnl|Prokka|IONCFDAA_44); gnlProkkaIONCFDAA_45 (original name was: gnl|Prokka|IONCFDAA_45); gnlProkkaIONCFDAA_46 (original name was: gnl|Prokka|IONCFDAA_46); gnlProkkaIONCFDAA_48 (original name was: gnl|Prokka|IONCFDAA_48); gnlProkkaIONCFDAA_49 (original name was: gnl|Prokka|IONCFDAA_49); gnlProkkaIONCFDAA_50 (original name was: gnl|Prokka|IONCFDAA_50); gnlProkkaIONCFDAA_51 (original name was: gnl|Prokka|IONCFDAA_51)

Compact view

gnlProkkaIONCFDAA_3 - Region 1 - lanthipeptide-class-i

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Location: 41,961 - 72,167 nt. (total: 30,207 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

gnlProkkaIONCFDAA_39 - Region 1 - RRE-containing

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Location: 26,057 - 46,410 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaIONCFDAA_47 - Region 1 - NRPS-like

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Location: 72,469 - 114,898 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 72468 - 114898:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg47_92

AMP-binding (12..401): X

nrpys: Leu, Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)