Select genomic region:
Overview
20.1
33.1
40.1
40.2
48.1
52.1
55.1
56.1

### Identified primary metabolite regions

c00020_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_20)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 20.1 | Others_HGD_unassigned | Putative | 103,801 | 128,024 |

c00033_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_33)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 33.1 | Rnf_complex | E-MGC | 1 | 16,572 | Rnf complex C. sporogenes | RNF | 83%

c00040_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_40)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 40.1 | Pyruvate2acetate-formate | SCFA | 1 | 13,086 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%
Region 40.2 | TPP_fatty_acids | Putative | 34,193 | 59,049 |

c00048_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_48)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 48.1 | porA | SCFA | 54,725 | 77,573 | porA C. sporogenes | POR | 60%

c00052_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_52)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 52.1 | TPP_AA_metabolism | Putative | 13,533 | 39,417 |

c00055_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_55)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 55.1 | succinate2propionate | SCFA | 5,361 | 22,237 | Succinate to propionate B. theta | PRO | 66%

c00056_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_56)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 56.1 | NADH_dehydrogenase_I | E-MGC | 1 | 27,816 | NADH dehydrogenase I Bacteroides sp. | NADHD | 66%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 20.1 | Others_HGD_unassigned | Putative | 103,801 | 128,024 |
Region 33.1 | Rnf_complex | E-MGC | 1 | 16,572 | Rnf complex C. sporogenes | RNF | 83%
Region 40.1 | Pyruvate2acetate-formate | SCFA | 1 | 13,086 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%
Region 40.2 | TPP_fatty_acids | Putative | 34,193 | 59,049 |
Region 48.1 | porA | SCFA | 54,725 | 77,573 | porA C. sporogenes | POR | 60%
Region 52.1 | TPP_AA_metabolism | Putative | 13,533 | 39,417 |
Region 55.1 | succinate2propionate | SCFA | 5,361 | 22,237 | Succinate to propionate B. theta | PRO | 66%
Region 56.1 | NADH_dehydrogenase_I | E-MGC | 1 | 27,816 | NADH dehydrogenase I Bacteroides sp. | NADHD | 66%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_19)
  c00021_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_32)
  c00034_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_39)
  c00041_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_47)
  c00049_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_51)
  c00053_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_54)
  c00057_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_116)
  c00117_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_117)
  c00118_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_120)
  c00121_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_121)
  c00122_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_122)
  c00123_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_123)
  c00124_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_124)
  c00125_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_125)
  c00126_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_126)
  c00127_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_127)
  c00128_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_128)
  c00129_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_129)
  c00130_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_130)
  c00131_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_131)
  c00132_gnlPro.. (original name was: gnl|Prokka|CGEJPLMF_132)

Compact view
c00020_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 103,801 - 128,024 nt. (total: 24,224 nt) Show pHMM detection rules used
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00033_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 16,572 nt. (total: 16,572 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00040_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 13,086 nt. (total: 13,086 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00040_gnlPro.. - Region 2 - TPP_fatty_acids
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 34,193 - 59,049 nt. (total: 24,857 nt) Show pHMM detection rules used
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00048_gnlPro.. - Region 1 - porA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 54,725 - 77,573 nt. (total: 22,849 nt) Show pHMM detection rules used
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00052_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 13,533 - 39,417 nt. (total: 25,885 nt) Show pHMM detection rules used
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00055_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 5,361 - 22,237 nt. (total: 16,877 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00056_gnlPro.. - Region 1 - NADH_dehydrogenase_I
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 27,816 nt. (total: 27,816 nt) Show pHMM detection rules used
Region on contig edge.
NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.