Select genomic region:
Overview
26.1
46.1
46.2
50.1
71.1
108.1
126.1
140.1
185.1
188.1

### Identified primary metabolite regions

c00026_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_26)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 26.1 | NADH_dehydrogenase_I | E-MGC | 1 | 22,694 | NADH dehydrogenase I Bacteroides sp. | NADHD | 85%

c00046_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_46)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 46.1 | GR_fatty_acids,Pyruvate2acetate-formate | SCFA | 191,439 | 216,115 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%
Region 46.2 | TPP_fatty_acids | Putative | 237,223 | 255,792 |

c00050_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_50)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 50.1 | Pyruvate2acetate-formate | SCFA | 1 | 13,209 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%

c00071_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_71)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 71.1 | TPP_fatty_acids | Putative | 22,153 | 46,077 |

c00108_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_108)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 108.1 | porA | SCFA | 44,286 | 67,210 | porA C. sporogenes | POR | 80%

c00126_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_126)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 126.1 | TPP_AA_metabolism | Putative | 5,815 | 29,187 |

c00140_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_140)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 140.1 | Rnf_complex | E-MGC | 1 | 6,135 | Rnf complex C. sporogenes | RNF | 83%

c00185_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_185)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 185.1 | succinate2propionate | SCFA | 1 | 23,709 | Succinate to propionate B. theta | PRO | 66%

c00188_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_188)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 188.1 | Fumarate2succinate | SCFA | 1 | 2,911 | Fumarate to succinate B. thetaiotaomicron | SUC | 100%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 26.1 | NADH_dehydrogenase_I | E-MGC | 1 | 22,694 | NADH dehydrogenase I Bacteroides sp. | NADHD | 85%
Region 46.1 | GR_fatty_acids,Pyruvate2acetate-formate | SCFA | 191,439 | 216,115 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%
Region 46.2 | TPP_fatty_acids | Putative | 237,223 | 255,792 |
Region 50.1 | Pyruvate2acetate-formate | SCFA | 1 | 13,209 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%
Region 71.1 | TPP_fatty_acids | Putative | 22,153 | 46,077 |
Region 108.1 | porA | SCFA | 44,286 | 67,210 | porA C. sporogenes | POR | 80%
Region 126.1 | TPP_AA_metabolism | Putative | 5,815 | 29,187 |
Region 140.1 | Rnf_complex | E-MGC | 1 | 6,135 | Rnf complex C. sporogenes | RNF | 83%
Region 185.1 | succinate2propionate | SCFA | 1 | 23,709 | Succinate to propionate B. theta | PRO | 66%
Region 188.1 | Fumarate2succinate | SCFA | 1 | 2,911 | Fumarate to succinate B. thetaiotaomicron | SUC | 100%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_25)
  c00027_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_45)
  c00047_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_49)
  c00051_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_70)
  c00072_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_107)
  c00109_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_116)
  c00117_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_117)
  c00118_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_120)
  c00121_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_121)
  c00122_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_122)
  c00123_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_123)
  c00124_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_124)
  c00125_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_125)
  c00127_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_127)
  c00128_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_128)
  c00129_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_129)
  c00130_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_130)
  c00131_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_131)
  c00132_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_132)
  c00133_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_133)
  c00134_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_134)
  c00135_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_135)
  c00136_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_136)
  c00137_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_137)
  c00138_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_138)
  c00139_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_139)
  c00141_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_141)
  c00142_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_142)
  c00143_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_143)
  c00144_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_144)
  c00145_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_145)
  c00146_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_146)
  c00147_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_147)
  c00148_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_148)
  c00149_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_149)
  c00150_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_150)
  c00151_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_151)
  c00152_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_152)
  c00153_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_153)
  c00154_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_154)
  c00155_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_155)
  c00156_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_156)
  c00157_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_157)
  c00158_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_158)
  c00159_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_159)
  c00160_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_160)
  c00161_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_161)
  c00162_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_162)
  c00163_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_163)
  c00164_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_164)
  c00165_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_165)
  c00166_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_166)
  c00167_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_167)
  c00168_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_168)
  c00169_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_169)
  c00170_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_170)
  c00171_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_171)
  c00172_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_172)
  c00173_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_173)
  c00174_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_174)
  c00175_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_175)
  c00176_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_176)
  c00177_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_177)
  c00178_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_178)
  c00179_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_179)
  c00180_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_180)
  c00181_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_181)
  c00182_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_182)
  c00183_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_183)
  c00184_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_184)
  c00186_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_186)
  c00187_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_187)
  c00189_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_189)
  c00190_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_190)
  c00191_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_191)
  c00192_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_192)
  c00193_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_193)
  c00194_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_194)
  c00195_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_195)
  c00196_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_196)
  c00197_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_197)
  c00198_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_198)
  c00199_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_199)
  c00200_gnlPro.. (original name was: gnl|Prokka|JLAAJOJE_200)

Compact view
c00026_gnlPro.. - Region 1 - NADH_dehydrogenase_I
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 22,694 nt. (total: 22,694 nt) Show pHMM detection rules used
Region on contig edge.
NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00046_gnlPro.. - Region 1 - GR_fatty_acids,Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 191,439 - 216,115 nt. (total: 24,677 nt) Show pHMM detection rules used
GR_fatty_acids: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (POR or POR_N or PFOR_II))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
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zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00046_gnlPro.. - Region 2 - TPP_fatty_acids
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 237,223 - 255,792 nt. (total: 18,570 nt) Show pHMM detection rules used
Region on contig edge.
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00050_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 13,209 nt. (total: 13,209 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00071_gnlPro.. - Region 1 - TPP_fatty_acids
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 22,153 - 46,077 nt. (total: 23,925 nt) Show pHMM detection rules used
Region on contig edge.
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00108_gnlPro.. - Region 1 - porA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 44,286 - 67,210 nt. (total: 22,925 nt) Show pHMM detection rules used
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00126_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 5,815 - 29,187 nt. (total: 23,373 nt) Show pHMM detection rules used
Region on contig edge.
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00140_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 6,135 nt. (total: 6,135 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00185_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 23,709 nt. (total: 23,709 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00188_gnlPro.. - Region 1 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 2,911 nt. (total: 2,911 nt) Show pHMM detection rules used
Region on contig edge.
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.