GCA_034141345.1 - 10 region(s)

Identified primary metabolite regions

c00010_gnlPro.. (original name was: gnl|Prokka|EDPLBAPP_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	GR_fatty_acids,Pyruvate2acetate-formate	SCFA	190,090	220,381	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00020_gnlPro.. (original name was: gnl|Prokka|EDPLBAPP_20)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	Fumarate2succinate	SCFA	1	18,227	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00021_gnlPro.. (original name was: gnl|Prokka|EDPLBAPP_21)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	fatty_acids-unassigned	Putative	33,963	62,431

c00025_gnlPro.. (original name was: gnl|Prokka|EDPLBAPP_25)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	succinate2propionate	SCFA	14,653	39,296	Succinate to propionate B. theta	PRO	50%

c00029_gnlPro.. (original name was: gnl|Prokka|EDPLBAPP_29)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	TPP_fatty_acids	Putative	31,695	49,277

c00032_gnlPro.. (original name was: gnl|Prokka|EDPLBAPP_32)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 32.1	porA	SCFA	37,574	60,411	porA C. sporogenes	POR	60%

c00037_gnlPro.. (original name was: gnl|Prokka|EDPLBAPP_37)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	NADH_dehydrogenase_I	E-MGC	1	29,282	NADH dehydrogenase I Bacteroides sp.	NADHD	66%

c00055_gnlPro.. (original name was: gnl|Prokka|EDPLBAPP_55)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	TPP_AA_metabolism	Putative	19,858	45,845

c00058_gnlPro.. (original name was: gnl|Prokka|EDPLBAPP_58)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 58.1	PFOR_II_pathway	SCFA	46,132	69,677	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00073_gnlPro.. (original name was: gnl|Prokka|EDPLBAPP_73)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 73.1	Rnf_complex	E-MGC	27,912	53,248	Rnf complex C. sporogenes	RNF	83%

Compact view

c00010_gnlPro.. - Region 1 - GR_fatty_acids,Pyruvate2acetate-formate

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Location: 190,090 - 220,381 nt. (total: 30,292 nt) Show pHMM detection rules used

GR_fatty_acids: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (POR or POR_N or PFOR_II))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00020_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 18,227 nt. (total: 18,227 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00021_gnlPro.. - Region 1 - fatty_acids-unassigned

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Location: 33,963 - 62,431 nt. (total: 28,469 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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No matches found.

c00025_gnlPro.. - Region 1 - succinate2propionate

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Location: 14,653 - 39,296 nt. (total: 24,644 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00029_gnlPro.. - Region 1 - TPP_fatty_acids

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Location: 31,695 - 49,277 nt. (total: 17,583 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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resistance genes

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c00032_gnlPro.. - Region 1 - porA

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Location: 37,574 - 60,411 nt. (total: 22,838 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00037_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 1 - 29,282 nt. (total: 29,282 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00055_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 19,858 - 45,845 nt. (total: 25,988 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00058_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 46,132 - 69,677 nt. (total: 23,546 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00073_gnlPro.. - Region 1 - Rnf_complex

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Location: 27,912 - 53,248 nt. (total: 25,337 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

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