Select genomic region:
Overview
6.1
11.1
23.1
23.2
30.1
41.1
44.1
45.1
48.1

### Identified primary metabolite regions

c00006_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_6)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 6.1 | TPP_fatty_acids | Putative | 165,585 | 190,441 |

c00011_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_11)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 11.1 | Fumarate2succinate | SCFA | 23,840 | 47,353 | Fumarate to succinate B. thetaiotaomicron | SUC | 100%

c00023_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_23)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 23.1 | PFOR_II_pathway | SCFA | 161,481 | 185,038 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 23.2 | succinate2propionate | SCFA | 223,424 | 258,679 | Succinate to propionate B. theta | PRO | 100%

c00030_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_30)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 30.1 | porA | SCFA | 139,321 | 162,169 | porA C. sporogenes | POR | 60%

c00041_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_41)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 41.1 | fatty_acids-unassigned | Putative | 54,669 | 85,152 |

c00044_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_44)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 44.1 | Pyruvate2acetate-formate,GR_fatty_acids | Putative | 9,770 | 34,444 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%

c00045_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_45)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 45.1 | TPP_AA_metabolism | Putative | 69,683 | 95,662 |

c00048_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_48)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 48.1 | Rnf_complex | E-MGC | 1 | 18,624 | Rnf complex C. sporogenes | RNF | 83%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 6.1 | TPP_fatty_acids | Putative | 165,585 | 190,441 |
Region 11.1 | Fumarate2succinate | SCFA | 23,840 | 47,353 | Fumarate to succinate B. thetaiotaomicron | SUC | 100%
Region 23.1 | PFOR_II_pathway | SCFA | 161,481 | 185,038 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 23.2 | succinate2propionate | SCFA | 223,424 | 258,679 | Succinate to propionate B. theta | PRO | 100%
Region 30.1 | porA | SCFA | 139,321 | 162,169 | porA C. sporogenes | POR | 60%
Region 41.1 | fatty_acids-unassigned | Putative | 54,669 | 85,152 |
Region 44.1 | Pyruvate2acetate-formate,GR_fatty_acids | Putative | 9,770 | 34,444 | Pyruvate to acetate-formate B. thetaiotaomicron | PFL_acetate | 100%
Region 45.1 | TPP_AA_metabolism | Putative | 69,683 | 95,662 |
Region 48.1 | Rnf_complex | E-MGC | 1 | 18,624 | Rnf complex C. sporogenes | RNF | 83%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_5)
  c00007_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_10)
  c00012_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_22)
  c00024_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_29)
  c00031_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_40)
  c00042_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_43)
  c00046_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|OKEHJICG_47)

Compact view
c00006_gnlPro.. - Region 1 - TPP_fatty_acids
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 165,585 - 190,441 nt. (total: 24,857 nt) Show pHMM detection rules used
TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00011_gnlPro.. - Region 1 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 23,840 - 47,353 nt. (total: 23,514 nt) Show pHMM detection rules used
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00023_gnlPro.. - Region 1 - PFOR_II_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 161,481 - 185,038 nt. (total: 23,558 nt) Show pHMM detection rules used
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00023_gnlPro.. - Region 2 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 223,424 - 258,679 nt. (total: 35,256 nt) Show pHMM detection rules used
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00030_gnlPro.. - Region 1 - porA
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 139,321 - 162,169 nt. (total: 22,849 nt) Show pHMM detection rules used
porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00041_gnlPro.. - Region 1 - fatty_acids-unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 54,669 - 85,152 nt. (total: 30,484 nt) Show pHMM detection rules used
fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00044_gnlPro.. - Region 1 - GR_fatty_acids,Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 9,770 - 34,444 nt. (total: 24,675 nt) Show pHMM detection rules used
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)
GR_fatty_acids: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00045_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 69,683 - 95,662 nt. (total: 25,980 nt) Show pHMM detection rules used
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00048_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 18,624 nt. (total: 18,624 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.