GCA_034143165.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaBGGJPNPN_11 (original name was: gnl|Prokka|BGGJPNPN_11)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	NRPS-like	37,727	80,156

gnlProkkaBGGJPNPN_31 (original name was: gnl|Prokka|BGGJPNPN_31)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	RRE-containing	108,703	129,056	polysaccharide C	Saccharide	20%

Region	Type	From	To	Most similar known cluster	Similarity
Region 11.1	NRPS-like	37,727	80,156
Region 31.1	RRE-containing	108,703	129,056	polysaccharide C	Saccharide	20%

No secondary metabolite regions were found in these records:: gnlProkkaBGGJPNPN_1 (original name was: gnl|Prokka|BGGJPNPN_1); gnlProkkaBGGJPNPN_2 (original name was: gnl|Prokka|BGGJPNPN_2); gnlProkkaBGGJPNPN_3 (original name was: gnl|Prokka|BGGJPNPN_3); gnlProkkaBGGJPNPN_4 (original name was: gnl|Prokka|BGGJPNPN_4); gnlProkkaBGGJPNPN_5 (original name was: gnl|Prokka|BGGJPNPN_5); gnlProkkaBGGJPNPN_6 (original name was: gnl|Prokka|BGGJPNPN_6); gnlProkkaBGGJPNPN_7 (original name was: gnl|Prokka|BGGJPNPN_7); gnlProkkaBGGJPNPN_8 (original name was: gnl|Prokka|BGGJPNPN_8); gnlProkkaBGGJPNPN_9 (original name was: gnl|Prokka|BGGJPNPN_9); gnlProkkaBGGJPNPN_10 (original name was: gnl|Prokka|BGGJPNPN_10); gnlProkkaBGGJPNPN_12 (original name was: gnl|Prokka|BGGJPNPN_12); gnlProkkaBGGJPNPN_13 (original name was: gnl|Prokka|BGGJPNPN_13); gnlProkkaBGGJPNPN_14 (original name was: gnl|Prokka|BGGJPNPN_14); gnlProkkaBGGJPNPN_15 (original name was: gnl|Prokka|BGGJPNPN_15); gnlProkkaBGGJPNPN_16 (original name was: gnl|Prokka|BGGJPNPN_16); gnlProkkaBGGJPNPN_17 (original name was: gnl|Prokka|BGGJPNPN_17); gnlProkkaBGGJPNPN_18 (original name was: gnl|Prokka|BGGJPNPN_18); gnlProkkaBGGJPNPN_19 (original name was: gnl|Prokka|BGGJPNPN_19); gnlProkkaBGGJPNPN_20 (original name was: gnl|Prokka|BGGJPNPN_20); gnlProkkaBGGJPNPN_21 (original name was: gnl|Prokka|BGGJPNPN_21); gnlProkkaBGGJPNPN_22 (original name was: gnl|Prokka|BGGJPNPN_22); gnlProkkaBGGJPNPN_23 (original name was: gnl|Prokka|BGGJPNPN_23); gnlProkkaBGGJPNPN_24 (original name was: gnl|Prokka|BGGJPNPN_24); gnlProkkaBGGJPNPN_25 (original name was: gnl|Prokka|BGGJPNPN_25); gnlProkkaBGGJPNPN_26 (original name was: gnl|Prokka|BGGJPNPN_26); gnlProkkaBGGJPNPN_27 (original name was: gnl|Prokka|BGGJPNPN_27); gnlProkkaBGGJPNPN_28 (original name was: gnl|Prokka|BGGJPNPN_28); gnlProkkaBGGJPNPN_29 (original name was: gnl|Prokka|BGGJPNPN_29); gnlProkkaBGGJPNPN_30 (original name was: gnl|Prokka|BGGJPNPN_30)

Compact view

gnlProkkaBGGJPNPN_11 - Region 1 - NRPS-like

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Location: 37,727 - 80,156 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 37726 - 80156:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg11_51

AMP-binding (12..401): X

nrpys: Leu, Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaBGGJPNPN_31 - Region 1 - RRE-containing

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Location: 108,703 - 129,056 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1