GCA_034144545.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGBMOLFBF_2 (original name was: gnl|Prokka|GBMOLFBF_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	phosphonate	225,816	240,086	polysaccharide B	Saccharide	43%

gnlProkkaGBMOLFBF_23 (original name was: gnl|Prokka|GBMOLFBF_23)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	NRPS-like	32,267	74,696

gnlProkkaGBMOLFBF_35 (original name was: gnl|Prokka|GBMOLFBF_35)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	RRE-containing	75,399	95,752	polysaccharide C	Saccharide	16%

No secondary metabolite regions were found in these records:: gnlProkkaGBMOLFBF_1 (original name was: gnl|Prokka|GBMOLFBF_1); gnlProkkaGBMOLFBF_3 (original name was: gnl|Prokka|GBMOLFBF_3); gnlProkkaGBMOLFBF_4 (original name was: gnl|Prokka|GBMOLFBF_4); gnlProkkaGBMOLFBF_5 (original name was: gnl|Prokka|GBMOLFBF_5); gnlProkkaGBMOLFBF_6 (original name was: gnl|Prokka|GBMOLFBF_6); gnlProkkaGBMOLFBF_7 (original name was: gnl|Prokka|GBMOLFBF_7); gnlProkkaGBMOLFBF_8 (original name was: gnl|Prokka|GBMOLFBF_8); gnlProkkaGBMOLFBF_9 (original name was: gnl|Prokka|GBMOLFBF_9); gnlProkkaGBMOLFBF_10 (original name was: gnl|Prokka|GBMOLFBF_10); gnlProkkaGBMOLFBF_11 (original name was: gnl|Prokka|GBMOLFBF_11); gnlProkkaGBMOLFBF_12 (original name was: gnl|Prokka|GBMOLFBF_12); gnlProkkaGBMOLFBF_13 (original name was: gnl|Prokka|GBMOLFBF_13); gnlProkkaGBMOLFBF_14 (original name was: gnl|Prokka|GBMOLFBF_14); gnlProkkaGBMOLFBF_15 (original name was: gnl|Prokka|GBMOLFBF_15); gnlProkkaGBMOLFBF_16 (original name was: gnl|Prokka|GBMOLFBF_16); gnlProkkaGBMOLFBF_17 (original name was: gnl|Prokka|GBMOLFBF_17); gnlProkkaGBMOLFBF_18 (original name was: gnl|Prokka|GBMOLFBF_18); gnlProkkaGBMOLFBF_19 (original name was: gnl|Prokka|GBMOLFBF_19); gnlProkkaGBMOLFBF_20 (original name was: gnl|Prokka|GBMOLFBF_20); gnlProkkaGBMOLFBF_21 (original name was: gnl|Prokka|GBMOLFBF_21); gnlProkkaGBMOLFBF_22 (original name was: gnl|Prokka|GBMOLFBF_22); gnlProkkaGBMOLFBF_24 (original name was: gnl|Prokka|GBMOLFBF_24); gnlProkkaGBMOLFBF_25 (original name was: gnl|Prokka|GBMOLFBF_25); gnlProkkaGBMOLFBF_26 (original name was: gnl|Prokka|GBMOLFBF_26); gnlProkkaGBMOLFBF_27 (original name was: gnl|Prokka|GBMOLFBF_27); gnlProkkaGBMOLFBF_28 (original name was: gnl|Prokka|GBMOLFBF_28); gnlProkkaGBMOLFBF_29 (original name was: gnl|Prokka|GBMOLFBF_29); gnlProkkaGBMOLFBF_30 (original name was: gnl|Prokka|GBMOLFBF_30); gnlProkkaGBMOLFBF_31 (original name was: gnl|Prokka|GBMOLFBF_31); gnlProkkaGBMOLFBF_32 (original name was: gnl|Prokka|GBMOLFBF_32); gnlProkkaGBMOLFBF_33 (original name was: gnl|Prokka|GBMOLFBF_33); gnlProkkaGBMOLFBF_34 (original name was: gnl|Prokka|GBMOLFBF_34); gnlProkkaGBMOLFBF_36 (original name was: gnl|Prokka|GBMOLFBF_36); gnlProkkaGBMOLFBF_37 (original name was: gnl|Prokka|GBMOLFBF_37); gnlProkkaGBMOLFBF_38 (original name was: gnl|Prokka|GBMOLFBF_38); gnlProkkaGBMOLFBF_39 (original name was: gnl|Prokka|GBMOLFBF_39); gnlProkkaGBMOLFBF_40 (original name was: gnl|Prokka|GBMOLFBF_40); gnlProkkaGBMOLFBF_41 (original name was: gnl|Prokka|GBMOLFBF_41); gnlProkkaGBMOLFBF_42 (original name was: gnl|Prokka|GBMOLFBF_42); gnlProkkaGBMOLFBF_43 (original name was: gnl|Prokka|GBMOLFBF_43); gnlProkkaGBMOLFBF_44 (original name was: gnl|Prokka|GBMOLFBF_44); gnlProkkaGBMOLFBF_45 (original name was: gnl|Prokka|GBMOLFBF_45); gnlProkkaGBMOLFBF_46 (original name was: gnl|Prokka|GBMOLFBF_46); gnlProkkaGBMOLFBF_47 (original name was: gnl|Prokka|GBMOLFBF_47); gnlProkkaGBMOLFBF_48 (original name was: gnl|Prokka|GBMOLFBF_48); gnlProkkaGBMOLFBF_49 (original name was: gnl|Prokka|GBMOLFBF_49)

Compact view

gnlProkkaGBMOLFBF_2 - Region 1 - phosphonate

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Location: 225,816 - 240,086 nt. (total: 14,271 nt) Show pHMM detection rules used

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

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core biosynthetic genes

additional biosynthetic genes

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaGBMOLFBF_23 - Region 1 - NRPS-like

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Location: 32,267 - 74,696 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

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transport-related genes

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resistance

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NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 32266 - 74696:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg23_72

AMP-binding (12..401): X

nrpys: Ile, Leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaGBMOLFBF_35 - Region 1 - RRE-containing

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Location: 75,399 - 95,752 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1