Select genomic region:
Overview
16.1
28.1
35.1

### Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaODAODIGL_16 (original name was: gnl|Prokka|ODAODIGL_16)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 16.1 | lanthipeptide-class-i | 69,684 | 99,867 |

gnlProkkaODAODIGL_28 (original name was: gnl|Prokka|ODAODIGL_28)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 28.1 | RRE-containing | 14,393 | 34,746 | polysaccharide C | Saccharide | 20%

gnlProkkaODAODIGL_35 (original name was: gnl|Prokka|ODAODIGL_35)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 35.1 | phosphonate | 164,788 | 178,347 | polysaccharide B | Saccharide | 13%

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 16.1 | lanthipeptide-class-i | 69,684 | 99,867 |
Region 28.1 | RRE-containing | 14,393 | 34,746 | polysaccharide C | Saccharide | 20%
Region 35.1 | phosphonate | 164,788 | 178,347 | polysaccharide B | Saccharide | 13%

No secondary metabolite regions were found in these records:
  gnlProkkaODAODIGL_1 (original name was: gnl|Prokka|ODAODIGL_1)
  gnlProkkaODAODIGL_2 (original name was: gnl|Prokka|ODAODIGL_2)
  gnlProkkaODAODIGL_3 (original name was: gnl|Prokka|ODAODIGL_3)
  gnlProkkaODAODIGL_4 (original name was: gnl|Prokka|ODAODIGL_4)
  gnlProkkaODAODIGL_5 (original name was: gnl|Prokka|ODAODIGL_5)
  gnlProkkaODAODIGL_6 (original name was: gnl|Prokka|ODAODIGL_6)
  gnlProkkaODAODIGL_7 (original name was: gnl|Prokka|ODAODIGL_7)
  gnlProkkaODAODIGL_8 (original name was: gnl|Prokka|ODAODIGL_8)
  gnlProkkaODAODIGL_9 (original name was: gnl|Prokka|ODAODIGL_9)
  gnlProkkaODAODIGL_10 (original name was: gnl|Prokka|ODAODIGL_10)
  gnlProkkaODAODIGL_11 (original name was: gnl|Prokka|ODAODIGL_11)
  gnlProkkaODAODIGL_12 (original name was: gnl|Prokka|ODAODIGL_12)
  gnlProkkaODAODIGL_13 (original name was: gnl|Prokka|ODAODIGL_13)
  gnlProkkaODAODIGL_14 (original name was: gnl|Prokka|ODAODIGL_14)
  gnlProkkaODAODIGL_15 (original name was: gnl|Prokka|ODAODIGL_15)
  gnlProkkaODAODIGL_17 (original name was: gnl|Prokka|ODAODIGL_17)
  gnlProkkaODAODIGL_18 (original name was: gnl|Prokka|ODAODIGL_18)
  gnlProkkaODAODIGL_19 (original name was: gnl|Prokka|ODAODIGL_19)
  gnlProkkaODAODIGL_20 (original name was: gnl|Prokka|ODAODIGL_20)
  gnlProkkaODAODIGL_21 (original name was: gnl|Prokka|ODAODIGL_21)
  gnlProkkaODAODIGL_22 (original name was: gnl|Prokka|ODAODIGL_22)
  gnlProkkaODAODIGL_23 (original name was: gnl|Prokka|ODAODIGL_23)
  gnlProkkaODAODIGL_24 (original name was: gnl|Prokka|ODAODIGL_24)
  gnlProkkaODAODIGL_25 (original name was: gnl|Prokka|ODAODIGL_25)
  gnlProkkaODAODIGL_26 (original name was: gnl|Prokka|ODAODIGL_26)
  gnlProkkaODAODIGL_27 (original name was: gnl|Prokka|ODAODIGL_27)
  gnlProkkaODAODIGL_29 (original name was: gnl|Prokka|ODAODIGL_29)
  gnlProkkaODAODIGL_30 (original name was: gnl|Prokka|ODAODIGL_30)
  gnlProkkaODAODIGL_31 (original name was: gnl|Prokka|ODAODIGL_31)
  gnlProkkaODAODIGL_32 (original name was: gnl|Prokka|ODAODIGL_32)
  gnlProkkaODAODIGL_33 (original name was: gnl|Prokka|ODAODIGL_33)
  gnlProkkaODAODIGL_34 (original name was: gnl|Prokka|ODAODIGL_34)
  gnlProkkaODAODIGL_36 (original name was: gnl|Prokka|ODAODIGL_36)
  gnlProkkaODAODIGL_37 (original name was: gnl|Prokka|ODAODIGL_37)
  gnlProkkaODAODIGL_38 (original name was: gnl|Prokka|ODAODIGL_38)
  gnlProkkaODAODIGL_39 (original name was: gnl|Prokka|ODAODIGL_39)
  gnlProkkaODAODIGL_40 (original name was: gnl|Prokka|ODAODIGL_40)
  gnlProkkaODAODIGL_41 (original name was: gnl|Prokka|ODAODIGL_41)

Compact view
gnlProkkaODAODIGL_16 - Region 1 - lanthipeptide-class-i
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 69,684 - 99,867 nt. (total: 30,184 nt) Show pHMM detection rules used
lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03604))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Lanthipeptides
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Lanthipeptide predictions
Shows the possible core peptides for each biosynthetic enzyme.
Includes CompaRiPPson results for any available databases, with a detailed explanation here.
Lanthipeptides - No core peptides found.
Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.
No core peptides found.
gnlProkkaODAODIGL_28 - Region 1 - RRE-containing
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 14,393 - 34,746 nt. (total: 20,354 nt) Show pHMM detection rules used
RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
gnlProkkaODAODIGL_35 - Region 1 - phosphonate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 164,788 - 178,347 nt. (total: 13,560 nt) Show pHMM detection rules used
phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Gene overview
KnownClusterBlast
Gene/CDS overview
A brief tabular summary of genes/CDS features within the region.
Filtering the table will also search biosynthetic profiles and gene function data. If enabled, the overview will then zoom to show the area covered by the filtered selection.
Genes selected in the region drawing above will be marked in the table with an indicator to the left of the gene name.
Filter:
Automatically zoom to filtered/selected features

Identifier | Product | Length | Function | Sequence | NCBI Blast | Filter details
--- | --- | --- | --- | --- | --- | ---
|  | NT | AA |  | NT | AA |  |

No genes match the given filter
Similar known gene clusters from MIBiG 3.1
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.