GCA_034147625.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaNKAPMCLH_9 (original name was: gnl|Prokka|NKAPMCLH_9)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	RRE-containing	316,965	333,121

gnlProkkaNKAPMCLH_28 (original name was: gnl|Prokka|NKAPMCLH_28)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	RiPP-like	11,803	21,736

gnlProkkaNKAPMCLH_49 (original name was: gnl|Prokka|NKAPMCLH_49)

Region	Type	From	To	Most similar known cluster		Similarity
Region 49.1	arylpolyene	109,088	156,599	flexirubin	Other	48%

Region	Type	From	To	Most similar known cluster	Similarity
Region 9.1	RRE-containing	316,965	333,121
Region 28.1	RiPP-like	11,803	21,736
Region 49.1	arylpolyene	109,088	156,599	flexirubin	Other	48%

No secondary metabolite regions were found in these records:: gnlProkkaNKAPMCLH_1 (original name was: gnl|Prokka|NKAPMCLH_1); gnlProkkaNKAPMCLH_2 (original name was: gnl|Prokka|NKAPMCLH_2); gnlProkkaNKAPMCLH_3 (original name was: gnl|Prokka|NKAPMCLH_3); gnlProkkaNKAPMCLH_4 (original name was: gnl|Prokka|NKAPMCLH_4); gnlProkkaNKAPMCLH_5 (original name was: gnl|Prokka|NKAPMCLH_5); gnlProkkaNKAPMCLH_6 (original name was: gnl|Prokka|NKAPMCLH_6); gnlProkkaNKAPMCLH_7 (original name was: gnl|Prokka|NKAPMCLH_7); gnlProkkaNKAPMCLH_8 (original name was: gnl|Prokka|NKAPMCLH_8); gnlProkkaNKAPMCLH_10 (original name was: gnl|Prokka|NKAPMCLH_10); gnlProkkaNKAPMCLH_11 (original name was: gnl|Prokka|NKAPMCLH_11); gnlProkkaNKAPMCLH_12 (original name was: gnl|Prokka|NKAPMCLH_12); gnlProkkaNKAPMCLH_13 (original name was: gnl|Prokka|NKAPMCLH_13); gnlProkkaNKAPMCLH_14 (original name was: gnl|Prokka|NKAPMCLH_14); gnlProkkaNKAPMCLH_15 (original name was: gnl|Prokka|NKAPMCLH_15); gnlProkkaNKAPMCLH_16 (original name was: gnl|Prokka|NKAPMCLH_16); gnlProkkaNKAPMCLH_17 (original name was: gnl|Prokka|NKAPMCLH_17); gnlProkkaNKAPMCLH_18 (original name was: gnl|Prokka|NKAPMCLH_18); gnlProkkaNKAPMCLH_19 (original name was: gnl|Prokka|NKAPMCLH_19); gnlProkkaNKAPMCLH_20 (original name was: gnl|Prokka|NKAPMCLH_20); gnlProkkaNKAPMCLH_21 (original name was: gnl|Prokka|NKAPMCLH_21); gnlProkkaNKAPMCLH_22 (original name was: gnl|Prokka|NKAPMCLH_22); gnlProkkaNKAPMCLH_23 (original name was: gnl|Prokka|NKAPMCLH_23); gnlProkkaNKAPMCLH_24 (original name was: gnl|Prokka|NKAPMCLH_24); gnlProkkaNKAPMCLH_25 (original name was: gnl|Prokka|NKAPMCLH_25); gnlProkkaNKAPMCLH_26 (original name was: gnl|Prokka|NKAPMCLH_26); gnlProkkaNKAPMCLH_27 (original name was: gnl|Prokka|NKAPMCLH_27); gnlProkkaNKAPMCLH_29 (original name was: gnl|Prokka|NKAPMCLH_29); gnlProkkaNKAPMCLH_30 (original name was: gnl|Prokka|NKAPMCLH_30); gnlProkkaNKAPMCLH_31 (original name was: gnl|Prokka|NKAPMCLH_31); gnlProkkaNKAPMCLH_32 (original name was: gnl|Prokka|NKAPMCLH_32); gnlProkkaNKAPMCLH_33 (original name was: gnl|Prokka|NKAPMCLH_33); gnlProkkaNKAPMCLH_34 (original name was: gnl|Prokka|NKAPMCLH_34); gnlProkkaNKAPMCLH_35 (original name was: gnl|Prokka|NKAPMCLH_35); gnlProkkaNKAPMCLH_36 (original name was: gnl|Prokka|NKAPMCLH_36); gnlProkkaNKAPMCLH_37 (original name was: gnl|Prokka|NKAPMCLH_37); gnlProkkaNKAPMCLH_38 (original name was: gnl|Prokka|NKAPMCLH_38); gnlProkkaNKAPMCLH_39 (original name was: gnl|Prokka|NKAPMCLH_39); gnlProkkaNKAPMCLH_40 (original name was: gnl|Prokka|NKAPMCLH_40); gnlProkkaNKAPMCLH_41 (original name was: gnl|Prokka|NKAPMCLH_41); gnlProkkaNKAPMCLH_42 (original name was: gnl|Prokka|NKAPMCLH_42); gnlProkkaNKAPMCLH_43 (original name was: gnl|Prokka|NKAPMCLH_43); gnlProkkaNKAPMCLH_44 (original name was: gnl|Prokka|NKAPMCLH_44); gnlProkkaNKAPMCLH_45 (original name was: gnl|Prokka|NKAPMCLH_45); gnlProkkaNKAPMCLH_46 (original name was: gnl|Prokka|NKAPMCLH_46); gnlProkkaNKAPMCLH_47 (original name was: gnl|Prokka|NKAPMCLH_47); gnlProkkaNKAPMCLH_48 (original name was: gnl|Prokka|NKAPMCLH_48)

Compact view

gnlProkkaNKAPMCLH_9 - Region 1 - RRE-containing

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Location: 316,965 - 333,121 nt. (total: 16,157 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNKAPMCLH_28 - Region 1 - RiPP-like

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Location: 11,803 - 21,736 nt. (total: 9,934 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNKAPMCLH_49 - Region 1 - arylpolyene

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Location: 109,088 - 156,599 nt. (total: 47,512 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

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Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg49_82

AMP-binding (55..293): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMVITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)