GCA_034147845.1 - 9 region(s)

Identified primary metabolite regions

c00005_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_5)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	fatty_acids-unassigned	Putative	205,476	233,944

c00013_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	NADH_dehydrogenase_I	E-MGC	16,487	38,892	NADH dehydrogenase I Bacteroides sp.	NADHD	66%

c00023_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_23)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	succinate2propionate	SCFA	38,896	63,539	Succinate to propionate B. theta	PRO	50%
Region 23.2	TPP_AA_metabolism	Putative	106,317	132,304

c00039_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_39)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	Fumarate2succinate	SCFA	207,755	226,289	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00042_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_42)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 42.1	porA	SCFA	31,744	54,560	porA C. sporogenes	POR	60%

c00054_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_54)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 54.1	Pyruvate2acetate-formate	SCFA	100,488	123,513	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00060_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_60)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 60.1	PFOR_II_pathway	SCFA	72,673	96,218	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00062_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_62)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 62.1	Rnf_complex	E-MGC	39,227	64,563	Rnf complex C. sporogenes	RNF	83%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 5.1	fatty_acids-unassigned	Putative	205,476	233,944
Region 13.1	NADH_dehydrogenase_I	E-MGC	16,487	38,892	NADH dehydrogenase I Bacteroides sp.	NADHD	66%
Region 23.1	succinate2propionate	SCFA	38,896	63,539	Succinate to propionate B. theta	PRO	50%
Region 23.2	TPP_AA_metabolism	Putative	106,317	132,304
Region 39.1	Fumarate2succinate	SCFA	207,755	226,289	Fumarate to succinate B. thetaiotaomicron	SUC	100%
Region 42.1	porA	SCFA	31,744	54,560	porA C. sporogenes	POR	60%
Region 54.1	Pyruvate2acetate-formate	SCFA	100,488	123,513	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%
Region 60.1	PFOR_II_pathway	SCFA	72,673	96,218	PFOR II pathway B. thetaiotaomicron	PFORII	100%
Region 62.1	Rnf_complex	E-MGC	39,227	64,563	Rnf complex C. sporogenes	RNF	83%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_1); c00002_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_2); c00003_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_3); c00004_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_4); c00006_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_6); c00007_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_7); c00008_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_8); c00009_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_9); c00010_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_10); c00011_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_11); c00012_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_12); c00014_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_14); c00015_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_15); c00016_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_16); c00017_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_17); c00018_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_18); c00019_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_19); c00020_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_20); c00021_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_21); c00022_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_22); c00024_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_24); c00025_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_25); c00026_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_26); c00027_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_27); c00028_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_28); c00029_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_29); c00030_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_30); c00031_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_31); c00032_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_32); c00033_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_33); c00034_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_34); c00035_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_35); c00036_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_36); c00037_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_37); c00038_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_38); c00040_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_40); c00041_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_41); c00043_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_43); c00044_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_44); c00045_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_45); c00046_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_46); c00047_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_47); c00048_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_48); c00049_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_49); c00050_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_50); c00051_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_51); c00052_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_52); c00053_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_53); c00055_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_55); c00056_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_56); c00057_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_57); c00058_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_58); c00059_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_59); c00061_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_61); c00063_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_63); c00064_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_64); c00065_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_65); c00066_gnlPro.. (original name was: gnl|Prokka|PPAGHLHE_66)

Compact view

c00005_gnlPro.. - Region 1 - fatty_acids-unassigned

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Location: 205,476 - 233,944 nt. (total: 28,469 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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Similar known gene clusters

No matches found.

c00013_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 16,487 - 38,892 nt. (total: 22,406 nt) Show pHMM detection rules used

Region on contig edge.

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

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additional biosynthetic genes

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regulatory genes

resistance genes

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c00023_gnlPro.. - Region 1 - succinate2propionate

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Location: 38,896 - 63,539 nt. (total: 24,644 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00023_gnlPro.. - Region 2 - TPP_AA_metabolism

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Location: 106,317 - 132,304 nt. (total: 25,988 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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KnownClusterBlast

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No matches found.

c00039_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 207,755 - 226,289 nt. (total: 18,535 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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resistance genes

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c00042_gnlPro.. - Region 1 - porA

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Location: 31,744 - 54,560 nt. (total: 22,817 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

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resistance genes

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c00054_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 100,488 - 123,513 nt. (total: 23,026 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00060_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 72,673 - 96,218 nt. (total: 23,546 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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resistance genes

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c00062_gnlPro.. - Region 1 - Rnf_complex

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Location: 39,227 - 64,563 nt. (total: 25,337 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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