GCA_034150365.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGHOPMKBK_3 (original name was: gnl|Prokka|GHOPMKBK_3)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	RRE-containing	1	10,506

gnlProkkaGHOPMKBK_19 (original name was: gnl|Prokka|GHOPMKBK_19)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	arylpolyene	1	46,221	flexirubin	Other	48%

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	RRE-containing	1	10,506
Region 19.1	arylpolyene	1	46,221	flexirubin	Other	48%

No secondary metabolite regions were found in these records:: gnlProkkaGHOPMKBK_1 (original name was: gnl|Prokka|GHOPMKBK_1); gnlProkkaGHOPMKBK_2 (original name was: gnl|Prokka|GHOPMKBK_2); gnlProkkaGHOPMKBK_4 (original name was: gnl|Prokka|GHOPMKBK_4); gnlProkkaGHOPMKBK_5 (original name was: gnl|Prokka|GHOPMKBK_5); gnlProkkaGHOPMKBK_6 (original name was: gnl|Prokka|GHOPMKBK_6); gnlProkkaGHOPMKBK_7 (original name was: gnl|Prokka|GHOPMKBK_7); gnlProkkaGHOPMKBK_8 (original name was: gnl|Prokka|GHOPMKBK_8); gnlProkkaGHOPMKBK_9 (original name was: gnl|Prokka|GHOPMKBK_9); gnlProkkaGHOPMKBK_10 (original name was: gnl|Prokka|GHOPMKBK_10); gnlProkkaGHOPMKBK_11 (original name was: gnl|Prokka|GHOPMKBK_11); gnlProkkaGHOPMKBK_12 (original name was: gnl|Prokka|GHOPMKBK_12); gnlProkkaGHOPMKBK_13 (original name was: gnl|Prokka|GHOPMKBK_13); gnlProkkaGHOPMKBK_14 (original name was: gnl|Prokka|GHOPMKBK_14); gnlProkkaGHOPMKBK_15 (original name was: gnl|Prokka|GHOPMKBK_15); gnlProkkaGHOPMKBK_16 (original name was: gnl|Prokka|GHOPMKBK_16); gnlProkkaGHOPMKBK_17 (original name was: gnl|Prokka|GHOPMKBK_17); gnlProkkaGHOPMKBK_18 (original name was: gnl|Prokka|GHOPMKBK_18); gnlProkkaGHOPMKBK_20 (original name was: gnl|Prokka|GHOPMKBK_20); gnlProkkaGHOPMKBK_21 (original name was: gnl|Prokka|GHOPMKBK_21); gnlProkkaGHOPMKBK_22 (original name was: gnl|Prokka|GHOPMKBK_22); gnlProkkaGHOPMKBK_23 (original name was: gnl|Prokka|GHOPMKBK_23); gnlProkkaGHOPMKBK_24 (original name was: gnl|Prokka|GHOPMKBK_24); gnlProkkaGHOPMKBK_25 (original name was: gnl|Prokka|GHOPMKBK_25); gnlProkkaGHOPMKBK_26 (original name was: gnl|Prokka|GHOPMKBK_26); gnlProkkaGHOPMKBK_27 (original name was: gnl|Prokka|GHOPMKBK_27); gnlProkkaGHOPMKBK_28 (original name was: gnl|Prokka|GHOPMKBK_28); gnlProkkaGHOPMKBK_29 (original name was: gnl|Prokka|GHOPMKBK_29); gnlProkkaGHOPMKBK_30 (original name was: gnl|Prokka|GHOPMKBK_30); gnlProkkaGHOPMKBK_31 (original name was: gnl|Prokka|GHOPMKBK_31); gnlProkkaGHOPMKBK_32 (original name was: gnl|Prokka|GHOPMKBK_32); gnlProkkaGHOPMKBK_33 (original name was: gnl|Prokka|GHOPMKBK_33); gnlProkkaGHOPMKBK_34 (original name was: gnl|Prokka|GHOPMKBK_34); gnlProkkaGHOPMKBK_35 (original name was: gnl|Prokka|GHOPMKBK_35); gnlProkkaGHOPMKBK_36 (original name was: gnl|Prokka|GHOPMKBK_36); gnlProkkaGHOPMKBK_37 (original name was: gnl|Prokka|GHOPMKBK_37); gnlProkkaGHOPMKBK_38 (original name was: gnl|Prokka|GHOPMKBK_38); gnlProkkaGHOPMKBK_39 (original name was: gnl|Prokka|GHOPMKBK_39); gnlProkkaGHOPMKBK_40 (original name was: gnl|Prokka|GHOPMKBK_40); gnlProkkaGHOPMKBK_41 (original name was: gnl|Prokka|GHOPMKBK_41); gnlProkkaGHOPMKBK_42 (original name was: gnl|Prokka|GHOPMKBK_42); gnlProkkaGHOPMKBK_43 (original name was: gnl|Prokka|GHOPMKBK_43); gnlProkkaGHOPMKBK_44 (original name was: gnl|Prokka|GHOPMKBK_44); gnlProkkaGHOPMKBK_45 (original name was: gnl|Prokka|GHOPMKBK_45); gnlProkkaGHOPMKBK_46 (original name was: gnl|Prokka|GHOPMKBK_46); gnlProkkaGHOPMKBK_47 (original name was: gnl|Prokka|GHOPMKBK_47); gnlProkkaGHOPMKBK_48 (original name was: gnl|Prokka|GHOPMKBK_48); gnlProkkaGHOPMKBK_49 (original name was: gnl|Prokka|GHOPMKBK_49); gnlProkkaGHOPMKBK_50 (original name was: gnl|Prokka|GHOPMKBK_50); gnlProkkaGHOPMKBK_51 (original name was: gnl|Prokka|GHOPMKBK_51); gnlProkkaGHOPMKBK_52 (original name was: gnl|Prokka|GHOPMKBK_52); gnlProkkaGHOPMKBK_53 (original name was: gnl|Prokka|GHOPMKBK_53); gnlProkkaGHOPMKBK_54 (original name was: gnl|Prokka|GHOPMKBK_54); gnlProkkaGHOPMKBK_55 (original name was: gnl|Prokka|GHOPMKBK_55); gnlProkkaGHOPMKBK_56 (original name was: gnl|Prokka|GHOPMKBK_56); gnlProkkaGHOPMKBK_57 (original name was: gnl|Prokka|GHOPMKBK_57); gnlProkkaGHOPMKBK_58 (original name was: gnl|Prokka|GHOPMKBK_58); gnlProkkaGHOPMKBK_59 (original name was: gnl|Prokka|GHOPMKBK_59); gnlProkkaGHOPMKBK_60 (original name was: gnl|Prokka|GHOPMKBK_60); gnlProkkaGHOPMKBK_61 (original name was: gnl|Prokka|GHOPMKBK_61); gnlProkkaGHOPMKBK_62 (original name was: gnl|Prokka|GHOPMKBK_62); gnlProkkaGHOPMKBK_63 (original name was: gnl|Prokka|GHOPMKBK_63); gnlProkkaGHOPMKBK_64 (original name was: gnl|Prokka|GHOPMKBK_64); gnlProkkaGHOPMKBK_65 (original name was: gnl|Prokka|GHOPMKBK_65); gnlProkkaGHOPMKBK_66 (original name was: gnl|Prokka|GHOPMKBK_66); gnlProkkaGHOPMKBK_67 (original name was: gnl|Prokka|GHOPMKBK_67); gnlProkkaGHOPMKBK_68 (original name was: gnl|Prokka|GHOPMKBK_68); gnlProkkaGHOPMKBK_69 (original name was: gnl|Prokka|GHOPMKBK_69)

Compact view

gnlProkkaGHOPMKBK_3 - Region 1 - RRE-containing

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Location: 1 - 10,506 nt. (total: 10,506 nt) Show pHMM detection rules used

Region on contig edge.

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaGHOPMKBK_19 - Region 1 - arylpolyene

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Location: 1 - 46,221 nt. (total: 46,221 nt) Show pHMM detection rules used

Region on contig edge.

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

NRPS/PKS substrates

NRPS/PKS substrate predictions

ctg19_32

AMP-binding (46..308): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: YMRMIITSSK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)