GCA_034151865.1 - 7 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	porA	SCFA	191,495	214,340	porA C. sporogenes	POR	60%

c00005_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_5)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Pyruvate2acetate-formate	SCFA	1	14,707	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00034_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_34)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	succinate2propionate	SCFA	236,184	260,711	Succinate to propionate B. theta	PRO	50%
Region 34.2	Rnf_complex	E-MGC	346,136	371,223	Rnf complex C. sporogenes	RNF	83%

c00035_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_35)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	PFOR_II_pathway	SCFA	95,967	119,524	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00039_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_39)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	TPP_AA_metabolism	Putative	44,107	66,796

c00045_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_45)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	Fumarate2succinate	SCFA	103,103	126,588	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_1); c00003_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_3); c00004_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_4); c00006_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_6); c00007_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_7); c00008_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_8); c00009_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_9); c00010_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_10); c00011_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_11); c00012_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_12); c00013_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_13); c00014_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_14); c00015_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_15); c00016_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_16); c00017_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_17); c00018_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_18); c00019_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_19); c00020_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_20); c00021_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_21); c00022_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_22); c00023_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_23); c00024_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_24); c00025_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_25); c00026_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_26); c00027_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_27); c00028_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_28); c00029_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_29); c00030_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_30); c00031_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_31); c00032_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_32); c00033_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_33); c00036_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_36); c00037_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_37); c00038_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_38); c00040_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_40); c00041_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_41); c00042_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_42); c00043_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_43); c00044_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_44); c00046_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_46); c00047_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_47); c00048_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_48); c00049_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_49); c00050_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_50); c00051_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_51); c00052_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_52); c00053_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_53); c00054_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_54); c00055_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_55); c00056_gnlPro.. (original name was: gnl|Prokka|DLDMLLAD_56)

Compact view

c00002_gnlPro.. - Region 1 - porA

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Location: 191,495 - 214,340 nt. (total: 22,846 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00005_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 14,707 nt. (total: 14,707 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00034_gnlPro.. - Region 1 - succinate2propionate

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Location: 236,184 - 260,711 nt. (total: 24,528 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00034_gnlPro.. - Region 2 - Rnf_complex

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Location: 346,136 - 371,223 nt. (total: 25,088 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00035_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 95,967 - 119,524 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00039_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 44,107 - 66,796 nt. (total: 22,690 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00045_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 103,103 - 126,588 nt. (total: 23,486 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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