GCA_034555115.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPFEMEMEF_1 (original name was: gnl|Prokka|PFEMEMEF_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	cyclic-lactone-autoinducer	197,388	218,099
Region 1.2	RiPP-like	680,471	692,621

gnlProkkaPFEMEMEF_8 (original name was: gnl|Prokka|PFEMEMEF_8)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	terpene	97,910	110,094

gnlProkkaPFEMEMEF_10 (original name was: gnl|Prokka|PFEMEMEF_10)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	T3PKS	52,407	79,120

Region	Type	From	To	Similarity
Region 1.1	cyclic-lactone-autoinducer	197,388	218,099
Region 1.2	RiPP-like	680,471	692,621
Region 8.1	terpene	97,910	110,094
Region 10.1	T3PKS	52,407	79,120

No secondary metabolite regions were found in these records:: gnlProkkaPFEMEMEF_2 (original name was: gnl|Prokka|PFEMEMEF_2); gnlProkkaPFEMEMEF_3 (original name was: gnl|Prokka|PFEMEMEF_3); gnlProkkaPFEMEMEF_4 (original name was: gnl|Prokka|PFEMEMEF_4); gnlProkkaPFEMEMEF_5 (original name was: gnl|Prokka|PFEMEMEF_5); gnlProkkaPFEMEMEF_6 (original name was: gnl|Prokka|PFEMEMEF_6); gnlProkkaPFEMEMEF_7 (original name was: gnl|Prokka|PFEMEMEF_7); gnlProkkaPFEMEMEF_9 (original name was: gnl|Prokka|PFEMEMEF_9); gnlProkkaPFEMEMEF_11 (original name was: gnl|Prokka|PFEMEMEF_11); gnlProkkaPFEMEMEF_12 (original name was: gnl|Prokka|PFEMEMEF_12); gnlProkkaPFEMEMEF_13 (original name was: gnl|Prokka|PFEMEMEF_13); gnlProkkaPFEMEMEF_14 (original name was: gnl|Prokka|PFEMEMEF_14); gnlProkkaPFEMEMEF_15 (original name was: gnl|Prokka|PFEMEMEF_15); gnlProkkaPFEMEMEF_16 (original name was: gnl|Prokka|PFEMEMEF_16); gnlProkkaPFEMEMEF_17 (original name was: gnl|Prokka|PFEMEMEF_17); gnlProkkaPFEMEMEF_18 (original name was: gnl|Prokka|PFEMEMEF_18); gnlProkkaPFEMEMEF_19 (original name was: gnl|Prokka|PFEMEMEF_19); gnlProkkaPFEMEMEF_20 (original name was: gnl|Prokka|PFEMEMEF_20); gnlProkkaPFEMEMEF_21 (original name was: gnl|Prokka|PFEMEMEF_21); gnlProkkaPFEMEMEF_22 (original name was: gnl|Prokka|PFEMEMEF_22); gnlProkkaPFEMEMEF_23 (original name was: gnl|Prokka|PFEMEMEF_23); gnlProkkaPFEMEMEF_24 (original name was: gnl|Prokka|PFEMEMEF_24); gnlProkkaPFEMEMEF_25 (original name was: gnl|Prokka|PFEMEMEF_25); gnlProkkaPFEMEMEF_26 (original name was: gnl|Prokka|PFEMEMEF_26); gnlProkkaPFEMEMEF_27 (original name was: gnl|Prokka|PFEMEMEF_27); gnlProkkaPFEMEMEF_28 (original name was: gnl|Prokka|PFEMEMEF_28); gnlProkkaPFEMEMEF_29 (original name was: gnl|Prokka|PFEMEMEF_29); gnlProkkaPFEMEMEF_30 (original name was: gnl|Prokka|PFEMEMEF_30)

Compact view

gnlProkkaPFEMEMEF_1 - Region 1 - cyclic-lactone-autoinducer

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Location: 197,388 - 218,099 nt. (total: 20,712 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPFEMEMEF_1 - Region 2 - RiPP-like

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Location: 680,471 - 692,621 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193 or (YcaO or TIGR03604))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPFEMEMEF_8 - Region 1 - terpene

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Location: 97,910 - 110,094 nt. (total: 12,185 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPFEMEMEF_10 - Region 1 - T3PKS

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Location: 52,407 - 79,120 nt. (total: 26,714 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.