GCA_036551865.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaGDKPAMKK_105 (original name was: gnl|Prokka|GDKPAMKK_105)

Region	Type	From	To	Most similar known cluster		Similarity
Region 105.1	lanthipeptide-class-ii	1,199	23,829

gnlProkkaGDKPAMKK_299 (original name was: gnl|Prokka|GDKPAMKK_299)

Region	Type	From	To	Most similar known cluster		Similarity
Region 299.1	ranthipeptide	3,989	23,221

Region	Type	From	To	Most similar known cluster	Similarity
Region 105.1	lanthipeptide-class-ii	1,199	23,829
Region 299.1	ranthipeptide	3,989	23,221

Compact view

gnlProkkaGDKPAMKK_105 - Region 1 - lanthipeptide-class-ii

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Location: 1,199 - 23,829 nt. (total: 22,631 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Lanthipeptides

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

Lanthipeptide predictions

Lanthipeptide(s) for ctg105_7

allorf_05735_05806

Leader:

MMKMPGS

Core:

TEKSKLKKWECYILYR

Core with dehydrations:

DhbEKDhaKLKKWECysYILYR

antiSMASH-DB 4.0 matches for allorf_05735_05806

21.4% NZ_BMMB01000007.1: Lanthipeptides: allorf_024907_025011_lanthipeptide

4

SKLKKWECYIL

14

+ LK W CYI+

2

TALKPWCCYII

12

allorf_20197_20349

Leader:

MSEFWRYHLYQAKGALTEMKESFIG

Core:

KNKDSRSDGVCLDPLLYFRYQLNVK

Core with dehydrations:

KNKDDhaRDhaDGVCysLDPLLYFRYQLNVK

antiSMASH-DB 4.0 matches for allorf_20197_20349

21.9% NZ_MSRJ01000005.1: Lanthipeptides: allorf_216014_216223_lanthipeptide

3

KDSRSDGVCLDPLLYFRYQL

22

+D R DG+C L + +L

5

QDKRRDGLCQSQLHFHENRL

24

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lanthipeptides

Core peptide predictions

allorf_05735_05806 - Class II

Cleavage pHMM score: -6.90

RODEO score: 0

Monoisotopic mass: 2051.1 Da

Molecular weight: 2052.4 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2070.5 Da N = 1

allorf_20197_20349 - Class II

Cleavage pHMM score: -4.30

RODEO score: 0

Monoisotopic mass: 2934.5 Da

Molecular weight: 2936.3 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2954.4 Da N = 1

gnlProkkaGDKPAMKK_299 - Region 1 - ranthipeptide

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Location: 3,989 - 23,221 nt. (total: 19,233 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.