GCA_036552805.1 - 8 region(s)

Identified primary metabolite regions

c00006_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Putrescine2spermidine	Aliphatic_amine	1	23,920	Arginine2putrescine R. gnavus	PUTR	100%

c00016_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Pyruvate2acetate-formate	SCFA	1	5,014	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

c00018_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_18)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Putrescine2spermidine	Aliphatic_amine	1	13,073	Arginine2putrescine R. gnavus	PUTR	60%

c00084_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_84)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 84.1	Rnf_complex	E-MGC	12,894	37,871	Rnf complex C. sporogenes	RNF	83%

c00100_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_100)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 100.1	Others_HGD_unassigned	Putative	1	15,513

c00123_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_123)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 123.1	acetate2butyrate	SCFA	1,866	16,494	Acetate to butyrate C. sporogenes	BUT	83%

c00133_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_133)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 133.1	Putrescine2spermidine	Aliphatic_amine	1	7,551	Arginine2putrescine R. gnavus	PUTR	60%

c00138_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_138)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 138.1	TPP_AA_metabolism	Putative	55,041	71,384	Threonine to propionate E. coli	PROP	20%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_1); c00002_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_2); c00003_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_3); c00004_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_4); c00005_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_5); c00007_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_7); c00008_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_8); c00009_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_9); c00010_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_10); c00011_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_11); c00012_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_12); c00013_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_13); c00014_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_14); c00015_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_15); c00017_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_17); c00019_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_19); c00020_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_20); c00021_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_21); c00022_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_22); c00023_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_23); c00024_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_24); c00025_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_25); c00026_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_26); c00027_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_27); c00028_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_28); c00029_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_29); c00030_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_30); c00031_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_31); c00032_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_32); c00033_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_33); c00034_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_34); c00035_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_35); c00036_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_36); c00037_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_37); c00038_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_38); c00039_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_39); c00040_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_40); c00041_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_41); c00042_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_42); c00043_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_43); c00044_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_44); c00045_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_45); c00046_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_46); c00047_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_47); c00048_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_48); c00049_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_49); c00050_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_50); c00051_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_51); c00052_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_52); c00053_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_53); c00054_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_54); c00055_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_55); c00056_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_56); c00057_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_57); c00058_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_58); c00059_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_59); c00060_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_60); c00061_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_61); c00062_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_62); c00063_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_63); c00064_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_64); c00065_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_65); c00066_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_66); c00067_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_67); c00068_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_68); c00069_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_69); c00070_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_70); c00071_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_71); c00072_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_72); c00073_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_73); c00074_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_74); c00075_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_75); c00076_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_76); c00077_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_77); c00078_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_78); c00079_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_79); c00080_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_80); c00081_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_81); c00082_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_82); c00083_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_83); c00085_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_85); c00086_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_86); c00087_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_87); c00088_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_88); c00089_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_89); c00090_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_90); c00091_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_91); c00092_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_92); c00093_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_93); c00094_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_94); c00095_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_95); c00096_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_96); c00097_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_97); c00098_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_98); c00099_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_99); c00101_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_101); c00102_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_102); c00103_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_103); c00104_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_104); c00105_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_105); c00106_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_106); c00107_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_107); c00108_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_108); c00109_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_109); c00110_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_110); c00111_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_111); c00112_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_112); c00113_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_113); c00114_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_114); c00115_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_115); c00116_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_116); c00117_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_117); c00118_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_118); c00119_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_119); c00120_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_120); c00121_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_121); c00122_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_122); c00124_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_124); c00125_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_125); c00126_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_126); c00127_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_127); c00128_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_128); c00129_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_129); c00130_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_130); c00131_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_131); c00132_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_132); c00134_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_134); c00135_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_135); c00136_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_136); c00137_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_137); c00139_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_139); c00140_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_140); c00141_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_141); c00142_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_142); c00143_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_143); c00144_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_144); c00145_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_145); c00146_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_146); c00147_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_147); c00148_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_148); c00149_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_149); c00150_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_150); c00151_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_151); c00152_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_152); c00153_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_153); c00154_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_154); c00155_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_155); c00156_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_156); c00157_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_157); c00158_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_158); c00159_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_159); c00160_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_160); c00161_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_161); c00162_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_162); c00163_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_163); c00164_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_164); c00165_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_165); c00166_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_166); c00167_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_167); c00168_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_168); c00169_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_169); c00170_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_170); c00171_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_171); c00172_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_172); c00173_gnlPro.. (original name was: gnl|Prokka|KIBFGNFI_173)

Compact view

c00006_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 1 - 23,920 nt. (total: 23,920 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

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regulatory genes

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c00016_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 5,014 nt. (total: 5,014 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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c00018_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 1 - 13,073 nt. (total: 13,073 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00084_gnlPro.. - Region 1 - Rnf_complex

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Location: 12,894 - 37,871 nt. (total: 24,978 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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c00100_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 15,513 nt. (total: 15,513 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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No matches found.

c00123_gnlPro.. - Region 1 - acetate2butyrate

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Location: 1,866 - 16,494 nt. (total: 14,629 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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core biosynthetic genes

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c00133_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 1 - 7,551 nt. (total: 7,551 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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c00138_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 55,041 - 71,384 nt. (total: 16,344 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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