GCA_036727725.1 - 8 region(s)

Identified primary metabolite regions

c00006_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Putrescine2spermidine	Aliphatic_amine	23,158	46,599	Putrescine2spermidine E. rectale	SPRM	100%

c00008_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Pyruvate2acetate-formate	SCFA	1	17,283	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

c00010_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	fatty_acids-unassigned	Putative	1	12,698	Acetate to butyrate C. sporogenes	BUT	50%

c00015_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_15)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	porA	SCFA	1,528	24,997

c00036_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_36)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 36.1	gallic_acid_met	Aromatic	1	11,280	Gallic acid degradation B. sp. KLE	GALL	100%

c00050_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_50)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	Others_HGD_unassigned	Putative	6,858	31,114

c00064_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_64)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 64.1	Fumarate2succinate	SCFA	1	6,343

c00104_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_104)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 104.1	Rnf_complex,succinate2propionate	SCFA	1	32,564	Rnf complex C. sporogenes	RNF	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_1); c00002_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_2); c00003_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_3); c00004_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_4); c00005_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_5); c00007_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_7); c00009_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_9); c00011_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_11); c00012_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_12); c00013_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_13); c00014_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_14); c00016_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_16); c00017_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_17); c00018_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_18); c00019_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_19); c00020_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_20); c00021_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_21); c00022_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_22); c00023_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_23); c00024_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_24); c00025_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_25); c00026_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_26); c00027_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_27); c00028_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_28); c00029_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_29); c00030_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_30); c00031_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_31); c00032_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_32); c00033_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_33); c00034_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_34); c00035_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_35); c00037_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_37); c00038_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_38); c00039_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_39); c00040_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_40); c00041_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_41); c00042_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_42); c00043_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_43); c00044_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_44); c00045_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_45); c00046_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_46); c00047_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_47); c00048_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_48); c00049_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_49); c00051_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_51); c00052_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_52); c00053_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_53); c00054_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_54); c00055_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_55); c00056_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_56); c00057_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_57); c00058_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_58); c00059_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_59); c00060_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_60); c00061_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_61); c00062_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_62); c00063_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_63); c00065_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_65); c00066_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_66); c00067_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_67); c00068_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_68); c00069_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_69); c00070_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_70); c00071_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_71); c00072_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_72); c00073_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_73); c00074_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_74); c00075_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_75); c00076_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_76); c00077_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_77); c00078_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_78); c00079_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_79); c00080_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_80); c00081_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_81); c00082_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_82); c00083_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_83); c00084_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_84); c00085_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_85); c00086_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_86); c00087_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_87); c00088_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_88); c00089_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_89); c00090_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_90); c00091_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_91); c00092_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_92); c00093_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_93); c00094_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_94); c00095_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_95); c00096_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_96); c00097_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_97); c00098_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_98); c00099_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_99); c00100_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_100); c00101_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_101); c00102_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_102); c00103_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_103); c00105_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_105); c00106_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_106); c00107_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_107); c00108_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_108); c00109_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_109); c00110_gnlPro.. (original name was: gnl|Prokka|LKKGCLKG_110)

Compact view

c00006_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 23,158 - 46,599 nt. (total: 23,442 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

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transport-related genes

regulatory genes

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c00008_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 17,283 nt. (total: 17,283 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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c00010_gnlPro.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 12,698 nt. (total: 12,698 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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core biosynthetic genes

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regulatory genes

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encapsulation genes

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c00015_gnlPro.. - Region 1 - porA

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Location: 1,528 - 24,997 nt. (total: 23,470 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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No matches found.

c00036_gnlPro.. - Region 1 - gallic_acid_met

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Location: 1 - 11,280 nt. (total: 11,280 nt) Show pHMM detection rules used

Region on contig edge.

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

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core biosynthetic genes

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c00050_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 6,858 - 31,114 nt. (total: 24,257 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00064_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 6,343 nt. (total: 6,343 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

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regulatory genes

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c00104_gnlPro.. - Region 1 - Rnf_complex,succinate2propionate

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Location: 1 - 32,564 nt. (total: 32,564 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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